GrapeTree

For main documentation see the original project https://github.com/achtman-lab/GrapeTree

Here what we changed:

Distance Matrix only:

Print the Distance Matrix (in terms of alleles) and stops

Example:

grapetree.py -d /tmp/OUTPUT.tsv -p /tmp/PROFILE_FILE.tsv 

OR directly on MSTrees.py

python module/MSTrees.py -d /tmp/uf.csv -p ~/w/gisaid/metadata_tsv/izs/abruzzo/hamming_distance_matrix.tsv