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Pyadjoint v0.2.0#9

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bch0w merged 44 commits intomasteradjtomo/pyadjoint:masterfrom develadjtomo/pyadjoint:develCopy head branch name to clipboardJan 10, 2023

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Commits

Commits on Dec 21, 2022

• renamed doc -> docs

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• fixed up formatting and removed py2 backwards compatibility from all scripts.

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• bombed out old test directory, started new test directory

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• reformatted docstrings in dpss to match rest of package

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• moved calculate adjoint source funtion to new 'main' script to clean things up

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• cleaned up main processing script, updated readme, updated .gitignore

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• waveform misfit update: adjusted how the actual integration is performed based on princeton's version of pyadjoint, also added an daditional return value which provides misfit for each window, whic…

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• finished waveform misfit update with new 'windows' return value added to main processing script and adjoint source class, replaces the measurement parameter that was introduced in princeton version…

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• reformatting cc_traveltime_misfit file to be clearer what the main function is, added docstring to supporting functions

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Commits on Dec 22, 2022

• added window stats to cc_traveltime_misfit function, moved cc_error and utility functions from cc traveltime misfit into the utils directory to clean things up

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• overhauling and cleaning up mtm class, in progress, large sweeping changes to order of functions but internal variables and structure remains tthe same as before

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• removed .idea directory and .swp file

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• finished rough cleanup of MTM but still needs work

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• finished up MTM overhaul. renamed mtm util back to 'dpss' as it wasn't necessary to rename

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• moved log messages into main mtm caluclate function for easier readability

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Commits on Dec 23, 2022

• baselined both waveform misft and cctm against Princeton/Mines version of the code using the example data and window. Adjoing sources and misfit values returned the same

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Commits on Jan 1, 2023

• bug fix boolean check min cycle in windows to match old code

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• multitaper adjoint source bugfixes and tests passing, windowed stats matches rdno version

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• added exponentiated phase misfit copied from rdno version, cleaned up code and formatting, added comments where necessary

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• test passing for exponentiated phase misfit

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• added double difference measurement directly into waveform misfit function rather than keeping as a separate function

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• amended calculate_adjoint_source main function to accomodate double difference measurements

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• removed plotting from all underlying adjoint sources and moved into main adjoint source calculation function

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Commits on Jan 3, 2023

• removed boolean flags for adjsrc and window stats from all files

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Commits on Jan 4, 2023

• added DD capability to CCTM and added test to basic cover it

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• started work on DD MTM

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Commits on Jan 5, 2023

• finished including bulk of DD MTM measurement capabilities. still requires testing

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Commits on Jan 6, 2023

• bugfix incorrect sign for < check

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• fixed MTM test

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• running and passing test for DD MTM misfit

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Commits on Jan 7, 2023

• removed old documentation style and moved all descriptions and documentation building into the top level docs/ directory. set new docs theme to 'furo' as opposed to 'alabaster (looks nicer). got ri…

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• removed 'adjsrc_type' variable from the main calculate function as it was redundant, moved this functionality into the config object which is now the authority on the adjoint source type which is u…

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• moved config docstrings into main class to get sphinx autoapi to recognize it. added example dataset doc page. cleaned up usage docs page.

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• adding usage code snippets to each of the misfit functions. added citation/references back in

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Commits on Jan 10, 2023

• added disclaimers for math in all documentation and pointed to relevant references

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• finished double difference documentation. copped out on MTM because equations are loooong, reference paper isntead

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• moved warnings for double difference docs to the top of page to dissuade users from directly copying equations

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• remove manifest file

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• all tests now passing

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• waveform doc example force choice to be waveform

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• minor package updates for v0.1.0 release

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• Merge pull request #8 from adjtomo/package_refactor

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• Update README.md

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• Update CHANGELOG.md

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