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This package checks metadata curation for curatedMetagenomicData. To use it:

  1. Look at the template and already curated files to see what curated files should look like.
  2. Place a tab-separated file ending in "_metadata.tsv" in a directory under inst/curation. Commit and create a pull request. Or if you don't like git, use Github.com's "Upload Files" button to upload to create a pull request without the need to use git.
  3. Does the new dataset pass all checks? It takes 3-4 minutes for the check to be completed here:   Travis-CI Build Status
  4. See the detailed syntax-checking report.

If you don't want to wait for travisCI to finish checking, you can check on your own computer:

BiocInstaller::biocLite("waldronlab/curatedMetagenomicDataCuration", build_vignettes=TRUE)
browseVignettes("curatedMetagenomicDataCuration")

Note: the package gets built twice as a work-around to this Travis-CI for R issue. If this issue is resolved, the build can be made a little faster by reverting to the .travis.yml and .push_gh_pages.sh of this version.

For more information on contributing to curatedMetagenomicData, see CONTRIBUTING.md.

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  • Python 64.0%
  • R 31.6%
  • Shell 4.4%