This package checks metadata curation for curatedMetagenomicData. To use it:
- Look at the template and already curated files to see what curated files should look like.
- Place a tab-separated file ending in "_metadata.tsv" in a directory under inst/curation. Commit and create a pull request. Or if you don't like git, use Github.com's "Upload Files" button to upload to create a pull request without the need to use git.
- Does the new dataset pass all checks? It takes 3-4 minutes for the check to be completed here:
- See the detailed syntax-checking report.
If you don't want to wait for travisCI to finish checking, you can check on your own computer:
BiocInstaller::biocLite("waldronlab/curatedMetagenomicDataCuration", build_vignettes=TRUE)
browseVignettes("curatedMetagenomicDataCuration")
Note: the package gets built twice as a work-around to this Travis-CI for R issue. If this issue is resolved, the build can be made a little faster by reverting to the .travis.yml and .push_gh_pages.sh of this version.
For more information on contributing to curatedMetagenomicData, see CONTRIBUTING.md.