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[ENH] Update msm distance#369

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chrisholder merged 173 commits intomainaeon-toolkit/aeon:mainfrom update-msm-distanceaeon-toolkit/aeon:update-msm-distanceCopy head branch name to clipboardMay 5, 2023

+552-383

Commits

Commits on Apr 18, 2023

• refactored distances to use new bounding

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  2df61b7

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• refactored distances to use new bounding

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  77bc228

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• precommit fixes

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  971c5a7

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• added setup back

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  2d001d5

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• fixed tests

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  2d69ca4

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• begun adding new euclid and squared

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  08799a0

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• updated notebook

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  f2a3c1e

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• fixed test

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  ab67dc7

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• fixed examples

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• fixed examples

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Commits on Apr 19, 2023

• Revert "fixed tests"

  Show description for d16871a
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• Merge branch 'update-bounding-matrix' into update-euclid-squared-distance

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  cd3d6ca

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• added new tests

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• added ability to disabled numba when using generated_jit

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  65f5f4a

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• precommit fixes

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  8e82db7

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• undo setup

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  5040051

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• fixed typo

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  9b37626

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• added new distances to util funcs

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• precommit fixes

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  047f0e7

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• fixed clustering tests

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• precommit fixes

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Commits on Apr 20, 2023

• removed generated_jit as it was adding 200ms to every call

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• begun refactor

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• begun refactor

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• fixed bug in twe alignment path

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  55a21d2

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• Merge branch 'update-bounding-matrix' into update-euclid-squared-distance

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  4ed8914

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• merge fixes

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• Merge branch 'update-euclid-squared-distance' into update-alignment-path

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  177b525

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• fixed lcss and merge bounding matrix fixes

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  7d4447b

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• precommit fixes

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• precommit fixes

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  3e863f5

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• Merge branch 'update-bounding-matrix' into update-euclid-squared-distance

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• Merge branch 'update-euclid-squared-distance' into update-alignment-path

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  af0efa4

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• changed name of alginment path file

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  9d167e2

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• merge alignment path changes

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  6e88d59

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• started writing dtw

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Commits on Apr 21, 2023

• updated other dtw functions!

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• wrote tests

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  2abb1e3

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• merge main

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  603eb75

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• merged main and cleaned up docs. Added unequal length tests

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  410c622

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• fixed setup.cfg

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  b6bfbf2

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• Merge branch 'update-euclid-squared-distance' into update-alignment-path

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  17248ae

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• updated docs

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• updated docs

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  9daff83

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• merged updates from alignment

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• added new tests for cost matrix and alignment paths

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  439f82a

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• disabled numba checks so can run without numba to ensure results are correct

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• precommit fixes

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  4d60f17

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• begun refactor

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  976ebd2

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• fixed typo in dtw cost matrix

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  3d9dc0e

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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  f23fdd7

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• added pairwise

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• added raises to docs

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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Commits on Apr 22, 2023

• started fixing tests

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  17e032e

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• fixed EE tests

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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  13b9ab5

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• fixed tests for ddtw

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  5bcf46e

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• fixed tests in clustering

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  ccd987d

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• precommit fixes

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  77af422

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• fixed reshape issue

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  5fc8654

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• Merge branch 'update-euclid-squared-distance' into update-alignment-path

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• Merge branch 'update-alignment-path' into update-dtw-distance

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  b3b97a0

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• merge fixes and updated reshape

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  abccdd8

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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  ea27fb1

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• updated reshape and docs

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• updated docstring

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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  b12b145

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• updated authors

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Commits on Apr 23, 2023

• started refactor

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  51ba9f0

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• started refactor

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  5d09836

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• fixed issue where parameters not being passed

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  167a206

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• fixed issue where parameters not being passed

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  d54f601

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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• Merge branch 'update-dtw-distance' into update-wdtw-distance

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  d06b09d

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• refactored wdtw

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• Merge branch 'update-ddtw-distance' into update-wdtw-distance

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  3126f3d

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• fixed tests

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  54e18a2

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• fixed example

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  e5be694

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• begun refactor

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• Merge branch 'main' into update-alignment-path

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• Merge branch 'update-alignment-path' into update-dtw-distance

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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• Merge branch 'update-dtw-distance' into update-wdtw-distance

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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  2bf0df9

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• fixed tests

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  f8289c1

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• removed redundent expected value

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  02fbdd5

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• updated parameter check

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  653c66e

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• updated parameter check

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  63682dd

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• update parameter check

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  1e3d90d

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Commits on Apr 24, 2023

• started refactor

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  6e188ee

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• fixed example

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  73e7074

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  fe8c9d8

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• merged main

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• Merge branch 'update-dtw-distance' into update-ddtw-distance

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• Merge branch 'update-ddtw-distance' into update-wdtw-distance

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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  8ee2f02

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  2f0e79f

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• continue with refactor

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  00e123e

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• added fastmath flag

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• all tests passing

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Commits on Apr 25, 2023

• added fastmath flag

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  66a9010

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• Merge branch 'update-wdtw-distance' into update-lcss-distance

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  ec80240

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• merge main

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  1a8b8db

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• Merge branch 'update-ddtw-distance' into update-wdtw-distance

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  3710637

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• removed fastmath because it cases errors in lcss

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  6cb2239

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• precommit fixes

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  c586abe

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• added erp

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  6e4e1fe

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• added erp

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  4a064d2

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• change g parameter to accept array

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  3b747af

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• updated lcss example

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  0ac1f38

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• fixed example

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• fixed example

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  9fd7de5

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• started refactor

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Commits on Apr 29, 2023

• updated pairwise to support multiple to multiple and single to multiple

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• precommit fixes

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  37a49ba

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• uncomment test setup

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• Merge branch 'main' into refactor-pairwise

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• added exampels

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• merged

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  348c716

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• remove redundent code

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• remove redundent code

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• Merge branch 'refactor-pairwise' into update-ddtw-distance

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  cf0a04a

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• refactored pairwise distance

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  bbf448b

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• refactored pairwise distance

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  e40cfaa

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• begun refactor

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  ea2c13a

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• merge main

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Commits on Apr 30, 2023

• Merge branch 'update-ddtw-distance' into update-wdtw-distance

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  bf6b531

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• refactored pairwise distance

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  f60c086

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• begun refactoring pairwise

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  2052cb4

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• updated examples

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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  1a17714

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• refactored pairwise distance

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• refactored pairwise distance

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  6b5d5c3

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• recomment setup

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  246f9ea

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• refactored pairwise distance

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  55ce56e

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• precommit

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  e0966fa

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• updated examples

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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  25e9381

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• updated examples

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  3325345

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• added fast math

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  c1a533d

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  22eddc1

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• refactored pairwise distance

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  8fbcc32

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• continue refactor

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  80b1286

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• updated examples

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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• update example

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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Commits on May 1, 2023

• continue refactor

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  aaf7764

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• remove example distance values

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  41cef1a

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• updated examples

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Commits on May 2, 2023

• fixed examples

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• Merge branch 'update-wdtw-distance' into update-wddtw-distance

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  0a9979c

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• fixed examples

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  16eb31a

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• Merge branch 'update-wddtw-distance' into update-lcss-distance

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  311b981

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• fixed alignment path and examples

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• uncomment setup

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• merged

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• precommit

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• Merge branch 'update-lcss-distance' into update-erp-distance

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  4f3a35b

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• updated pairwise and tests

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  ab345fe

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• setup

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  decd184

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• refactored edr distance

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  75bee9b

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• setup

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  65ea072

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• refactored twe distance

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  129cd5a

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• refactored msm distance

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Commits on May 3, 2023

• fixed incorrect tests in classification

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Commits on May 5, 2023

• merge main

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