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Issues: aertslab/pySCENIC

Possible solutions for GRNBoost2/GENIE3 Dask issues
#163 opened May 1, 2020 by cflerin
Open 2
pySCENIC for other species
#172 by singcell was closed Apr 11, 2022
Closed 3
Aggregating results across pySCENIC runs
#169 by diegoalexespi was closed Feb 18, 2021
Closed 6
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195 Open 344 Closed
195 Open 344 Closed
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Issues list

KeyError 'Field <GENE> does not exist in schema' at prune2df step for tutorial bug Something isn't working
#589 opened Oct 23, 2024 by tuanpham96
3
output from singularity-pyscenic - downstream analysis question Further information is requested
#588 opened Oct 19, 2024 by yulchen810
[results]about MotifSimilarityQvalue, OrthologousIdentity and Annotation in results question Further information is requested
#587 opened Oct 17, 2024 by SYSUMSD
1
pyscenic ctx error - EOFError bug Something isn't working
#586 opened Oct 16, 2024 by yulchen810
2
pyscenic grn: error: argument expression_mtx_fname bug Something isn't working
#585 opened Oct 15, 2024 by yulchen810
1
[BUG] bug Something isn't working
#584 opened Oct 14, 2024 by aterceros
2
unable to pull [ERROR] bug Something isn't working
#583 opened Oct 14, 2024 by yulchen810
3
[BUG] grnboost2 reports msgpack._cmsgpack.unpackb ValueError: 3159985209 exceeds max_bin_len(2147483647) bug Something isn't working
#582 opened Oct 3, 2024 by xyang2uchicago
[BUG] The whole AUC matrix are 0 values bug Something isn't working
#581 opened Sep 27, 2024 by baptisteavot-ukdri
2
[issue] running pySCENIC on large datasets question Further information is requested
#580 opened Sep 26, 2024 by li-xuyang28
1
[BUG]pyscenic error with numpy has no attribute 'object' bug Something isn't working
#579 opened Sep 25, 2024 by anyang-kevin
2
ERROR: module 'numpy' has no attribute 'object' bug Something isn't working
#578 opened Sep 17, 2024 by xyang2uchicago
3
High activity scores does not mean high expression level?
#577 opened Sep 15, 2024 by Sirin24
binarize function error bug Something isn't working
#575 opened Sep 13, 2024 by apal6
Correct TF File question Further information is requested
#573 opened Sep 10, 2024 by amiramarouf
1
compare between different conditions
#570 opened Sep 4, 2024 by Sirin24
1
Different batches/studies
#569 opened Aug 24, 2024 by Flu09
2
how to generate the heat map plot of the modules ? question Further information is requested
#568 opened Aug 23, 2024 by Flu09
3
[BUG] pyscenic grn and type error bug Something isn't working
#567 opened Aug 20, 2024 by tutu256
1
IDs for TFs missing bug Something isn't working
#566 opened Aug 12, 2024 by chrarnold
1
arboreto_with_multiprocessing.py fails for every target bug Something isn't working
#564 opened Aug 5, 2024 by noranekonobokkusu
1
[BUG] empty adjacencies file when running pyscenic grn via docker bug Something isn't working
#563 opened Aug 2, 2024 by iammrtza
1
Joint analysis of cell and nuclear data question Further information is requested
#562 opened Aug 1, 2024 by Dragonlongzhilin
[BUG] grnboost2 TypeError: Must supply at least one delayed object bug Something isn't working
#561 opened Jul 19, 2024 by AAA-3
6
[BUG]pyscenic grn ERR when running on HPC with slurm bug Something isn't working
#560 opened Jul 17, 2024 by jung233
5
ProTip! What’s not been updated in a month: updated:<2024-09-24.