Add F RandomVariable #4761
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| # Cancels all previous workflow runs for pull requests that have not completed. | |
| concurrency: | |
| # The concurrency group contains the workflow name and the branch name for pull requests | |
| # or the commit hash for any other events. | |
| group: ${{ github.workflow }}-${{ github.event_name == 'pull_request' && github.head_ref || github.sha }} | |
| cancel-in-progress: true | |
| jobs: | |
| changes: | |
| name: "Check for changes" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| changes: ${{ steps.changes.outputs.src }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| filters: | | |
| python: &python | |
| - 'aesara/**/*.py' | |
| - 'tests/**/*.py' | |
| - 'aesara/**/*.pyx' | |
| - 'tests/**/*.pyx' | |
| - '*.py' | |
| src: | |
| - *python | |
| - 'aesara/**/*.c' | |
| - 'tests/**/*.c' | |
| - 'aesara/**/*.h' | |
| - 'tests/**/*.h' | |
| - '.github/workflows/*.yml' | |
| - 'setup.cfg' | |
| - 'requirements.txt' | |
| style: | |
| name: Check code style | |
| needs: changes | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.changes.outputs.changes == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - uses: pre-commit/action@v3.0.0 | |
| test: | |
| name: "Test py${{ matrix.python-version }}: ${{ matrix.part }}" | |
| needs: | |
| - changes | |
| - style | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.changes.outputs.changes == 'true' && needs.style.result == 'success' }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| # Numba doesn't yet support 3.11, so we test primarly on 3.10, and | |
| # below we add an include for 3.11 without Numba. | |
| python-version: ["3.8", "3.10"] | |
| fast-compile: [0] | |
| float32: [0] | |
| install-numba: [1] | |
| part: | |
| - "tests --ignore=tests/tensor --ignore=tests/sparse --ignore=tests/tensor/nnet --ignore=tests/tensor/signal" | |
| - "tests/tensor tests/sparse --ignore=tests/tensor/test_basic.py --ignore=tests/tensor/test_math.py --ignore=tests/tensor/test_math_scipy.py --ignore=tests/tensor/test_inplace.py --ignore=tests/tensor/test_elemwise.py --ignore=tests/tensor/rewriting/test_basic.py --ignore=tests/tensor/rewriting/test_math.py --ignore=tests/tensor/nnet --ignore=tests/tensor/signal" | |
| - "tests/tensor/test_basic.py tests/tensor/test_math.py tests/tensor/test_math_scipy.py tests/tensor/test_inplace.py" | |
| - "tests/tensor/test_elemwise.py tests/tensor/rewriting/test_basic.py tests/tensor/rewriting/test_math.py" | |
| - "tests/tensor/nnet/test_conv.py" | |
| include: | |
| - python-version: "3.8" | |
| fast-compile: 1 | |
| float32: 1 | |
| install-numba: 1 | |
| part: "tests --ignore=tests/tensor/nnet --ignore=tests/tensor/signal" | |
| - python-version: "3.8" | |
| fast-compile: 1 | |
| float32: 0 | |
| install-numba: 1 | |
| part: "tests --ignore=tests/tensor/nnet --ignore=tests/tensor/signal" | |
| - python-version: "3.11" | |
| fast-compile: 0 | |
| float32: 0 | |
| install-numba: 0 | |
| part: "tests/scan/test_basic.py" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create matrix id | |
| id: matrix-id | |
| env: | |
| MATRIX_CONTEXT: ${{ toJson(matrix) }} | |
| run: | | |
| echo $MATRIX_CONTEXT | |
| export MATRIX_ID=`echo $MATRIX_CONTEXT | md5sum | cut -c 1-32` | |
| echo $MATRIX_ID | |
| echo "::set-output name=id::$MATRIX_ID" | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| mamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" mkl "numpy>=1.23.3" scipy pip mkl-service graphviz cython pytest coverage pytest-cov pytest-benchmark sympy filelock etuples logical-unification miniKanren cons typing_extensions "setuptools>=48.0.0" | |
| if [[ $INSTALL_NUMBA == "1" ]]; then mamba install --yes -q -c conda-forge -c numba "python~=${PYTHON_VERSION}=*_cpython" "numba>=0.57.0"; fi | |
| mamba install --yes -q -c conda-forge "python~=${PYTHON_VERSION}=*_cpython" "numpy>=1.23.3" jax jaxlib | |
| pip install --no-deps -e ./ | |
| mamba list && pip freeze | |
| python -c 'import aesara; print(aesara.config.__str__(print_doc=False))' | |
| python -c 'import aesara; assert(aesara.config.blas__ldflags != "")' | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| INSTALL_NUMBA: ${{ matrix.install-numba }} | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| if [[ $FAST_COMPILE == "1" ]]; then export AESARA_FLAGS=$AESARA_FLAGS,mode=FAST_COMPILE; fi | |
| if [[ $FLOAT32 == "1" ]]; then export AESARA_FLAGS=$AESARA_FLAGS,floatX=float32; fi | |
| export AESARA_FLAGS=$AESARA_FLAGS,warn__ignore_bug_before=all,on_opt_error=raise,on_shape_error=raise,gcc__cxxflags=-pipe | |
| python -m pytest -x -r A --verbose --runslow --cov=aesara/ --cov-report=xml:coverage/coverage-${MATRIX_ID}.xml --no-cov-on-fail $PART --benchmark-skip | |
| env: | |
| MATRIX_ID: ${{ steps.matrix-id.outputs.id }} | |
| MKL_THREADING_LAYER: GNU | |
| MKL_NUM_THREADS: 1 | |
| OMP_NUM_THREADS: 1 | |
| PART: ${{ matrix.part }} | |
| FAST_COMPILE: ${{ matrix.fast-compile }} | |
| FLOAT32: ${{ matrix.float32 }} | |
| - name: Upload coverage file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: coverage/coverage-${{ steps.matrix-id.outputs.id }}.xml | |
| benchmarks: | |
| name: "Benchmarks" | |
| needs: | |
| - changes | |
| - style | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.changes.outputs.changes == 'true' && needs.style.result == 'success' }} | |
| strategy: | |
| fail-fast: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.9 | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| mamba install --yes -q -c conda-forge -c numba "python~=${PYTHON_VERSION}=*_cpython" mkl numpy scipy pip mkl-service cython pytest jax jaxlib pytest-benchmark "numba>=0.57.0" | |
| pip install -e ./ | |
| mamba list && pip freeze | |
| python -c 'import aesara; print(aesara.config.__str__(print_doc=False))' | |
| python -c 'import aesara; assert(aesara.config.blas__ldflags != "")' | |
| env: | |
| PYTHON_VERSION: 3.9 | |
| - name: Download previous benchmark data | |
| uses: actions/cache@v3 | |
| with: | |
| path: ./cache | |
| key: ${{ runner.os }}-benchmark | |
| - name: Run benchmarks | |
| shell: bash -l {0} | |
| run: | | |
| export AESARA_FLAGS=mode=FAST_COMPILE,warn__ignore_bug_before=all,on_opt_error=raise,on_shape_error=raise,gcc__cxxflags=-pipe | |
| python -m pytest --benchmark-only --benchmark-json output.json | |
| - name: Store benchmark result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Python Benchmark with pytest-benchmark | |
| tool: 'pytest' | |
| output-file-path: output.json | |
| external-data-json-path: ./cache/benchmark-data.json | |
| alert-threshold: '200%' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| comment-on-alert: ${{ github.event_name == 'push' }} | |
| fail-on-alert: true | |
| auto-push: false | |
| all-checks: | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| name: "All tests" | |
| needs: [changes, style, test] | |
| steps: | |
| - name: Check build matrix status | |
| if: ${{ needs.changes.outputs.changes == 'true' && (needs.style.result != 'success' || needs.test.result != 'success') }} | |
| run: exit 1 | |
| upload-coverage: | |
| runs-on: ubuntu-latest | |
| name: "Upload coverage" | |
| needs: [changes, all-checks] | |
| if: ${{ needs.changes.outputs.changes == 'true' && needs.all-checks.result == 'success' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.7 | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U coverage>=5.1 coveralls | |
| - name: Download coverage file | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage | |
| path: coverage | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| directory: ./coverage/ | |
| fail_ci_if_error: true |