ORC-Omics

Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link].

How to install

ORCO can be installe via pip: pip install orcomics

Example 1: This illustrates ORCO on nodal values using a toy 6-node network
Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.
Figure 1: This notebook shows how to visualize the networks computed in 'Example 1'

For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue.

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
orcomics		orcomics
.gitignore		.gitignore
Example 1.ipynb		Example 1.ipynb
Example 2.ipynb		Example 2.ipynb
Figure 1.ipynb		Figure 1.ipynb
LICENSE		LICENSE
MM_sample.npz		MM_sample.npz
README.md		README.md
pyproject.toml		pyproject.toml
test_ADJ.csv		test_ADJ.csv
test_data.xlsx		test_data.xlsx