ENA CRAM Archive Client Docs

The ENA CRAM Archive Client is designed for easy retrieval of reference sequences and their metadata.

Features

• get_metadata(self, sid) retrieve reference sequence
• get_sequence(self, sid) retrieve reference sequence metadata in json format
• get_service_info(self) retrieve service info in json format

Installation

pip install git+https://github.com/alextsaihi/enaCRAM.git

Example

In a case where you would like to print out the metadata, use get_metadata function. Similarly, get_sequence and get_service_info to retrieve the reference sequence and service info, respectively.

from enacram.enacram import enaCRAM

sequence_id = "3050107579885e1608e6fe50fae3f8d0"
ena = enaCRAM()

# reference sequence metadata
print(ena.get_metadata(sequence_id))

# reference sequence
ref_sequence = ena.get_sequence(sequence_id) 

# sequence service info
print(ena.get_service_info())