Skip to content

algbio/optimized-fd

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

71 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Algorithmic Optimization applied to Minimum Flow Decomposition via Integer Linear Programming

Introduction

In the Minimum Flow Decomposition (MFD) problem, we are given a flow in a directed acyclic graph (DAG) with unique source s and unique sink t, and we need to decompose it into the minimum number of weighted paths (usually the weights are positive integers) from s to t, such that for every edge the weights of the paths crossing the edge sum up to the flow value.

In the image below, an example of a flow network is displayed:

MFD Example

which generates the following decomposition into 5 paths:

MFD Example

MFD-optimized is an upgraded tool for MFD using integer linear programming by implementing several optimization that reduce the dimension of the search space (number of unkown variables).

Pre-requisites

Python libraries

  • Gurobipy (version 10.0.1)
  • Networkx (version 2.4)

Practical MPC

Run

To run the formulation, use python3 to execute the mfd_optimization.py file. Run python3 ./src/mfd_optimization.py -h for help.

Input graph

  • Use -i/--input FILE, where FILE contains the input DAGs and flow values.
  • The input file contains a sequence of flow networks separated by lines starting with #.
  • The first line of each flow network contains the number of vertices of the graph
  • Every following line u v f describes an edge from vertex u to v carrying f flow.
  • Vertices must be integers following a topological order of the graph.

Heuristic solution

  • To use safety optimization, a given flow decomposition is needed.
  • Use --heuristic HEURISTIC, where HEURISTIC contains a heuristic solution for every graph in the input FILE.
  • Every flow network is separated by a line starting with #.
  • Every following line represents a path v1,v2,... of weight w in the following format: w: [(v1, v2), (v2, v3), (v3, v4), ...].

Inexact MFD

This tool supports inexact flow decompositions, where the input graphs are not flow networks anymore but DAGs with intervals for every edge. An inexact flow decomposition is a flow decomposition of a feasible flow in these intervals.

  • Use --inexact for inexact MFDs.
  • Note that the input FILE must have edges of the form u v l r, describing edges from vertex u to v with interval [l,r].
  • Note that the input FILE is not allowed to have subpath constraints with inexact MFDs.

Subpath constraints

This tool supports subpath constraints, i.e. given subpaths S, it can find the minimum flow decomposition given the restriction that every path in S is a subpath of some weighted path in the MFD.

  • Use by including a line subpaths in the input FILE, after all edges, proceeded by lines of paths in the following format: v1, v2, v3, ....
  • Note that it can not be used with inexact flows.

Weighted MFD

Also included is an ILP model to solve a slightly modified MFD variant, which assumes that the path weights come from a set W. As of now, the set is defined to be all powers of two and includes the flow values of the input graph. This yields an approximation of the optimal solution of ratio log2(largest flow value).

  • Use --approx for the weighted MFD.
  • Not compatible with subpath constraints.
  • So far we do not print the paths, only the resulting flows which describe the number of paths passing through each edge of a certain weight.

About

No description, website, or topics provided.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Contributors 3

  •  
  •  
  •