Add method to procedurally generate matrices #331
Workflow file for this run
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| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| name: Tests on ${{ matrix.os }} - ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.7', '3.11', 'pypy-3.9'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Integrations (Ubuntu) | |
| if: contains(matrix.os, 'ubuntu') | |
| run: sudo apt-get install -y libarmadillo-dev | |
| - name: Install GraphBLAS (ubuntu) | |
| if: contains(matrix.os, 'ubuntu') | |
| # Install pre-built GraphBLAS from conda-forge because GraphBLAS packages in Ubuntu repos are too old to be useful. | |
| # See LAGraph's workflow: https://github.com/GraphBLAS/LAGraph/blob/stable/.github/workflows/build.yml | |
| run: | | |
| mkdir -p grb | |
| cd grb | |
| wget --quiet https://anaconda.org/conda-forge/graphblas/7.4.4/download/linux-64/graphblas-7.4.4-hcb278e6_0.conda | |
| unzip graphblas-7.4.4-hcb278e6_0.conda | |
| tar xvf pkg-graphblas-7.4.4-hcb278e6_0.tar.zst | |
| cd .. | |
| echo "FMM_CMAKE_FLAGS=-DCMAKE_MODULE_PATH=${{ github.workspace }}/grb/lib/cmake/SuiteSparse -DGraphBLAS_ROOT=${{ github.workspace }}/grb/" >> $GITHUB_ENV | |
| - name: Install GraphBLAS (macOS) | |
| if: contains(matrix.os, 'macos') | |
| # install suite-sparse which includes GraphBLAS and also FindGraphBLAS.cmake | |
| run: brew install suite-sparse | |
| - name: Configure | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| run: | | |
| cmake -S . -B build -DCMAKE_BUILD_TYPE=Debug -DFAST_MATRIX_MARKET_TEST=ON -DFAST_MATRIX_MARKET_TEST_COVERAGE=ON ${{ env.FMM_CMAKE_FLAGS }} | |
| - name: Build | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| env: | |
| CMAKE_BUILD_PARALLEL_LEVEL: 2 | |
| run: | | |
| cmake --build build --config Debug | |
| - name: Test | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| run: | | |
| cd build | |
| ctest -C Debug --output-on-failure --verbose | |
| - name: Python Build and Install | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| # On some platforms pip uses a temporary build directory but only copies the python/ directory there. | |
| # This breaks the relative symbolic links to the C++ library. Workaround is to pass the checkout directory | |
| # as an environment variable so CMakeLists.txt can read it and know where to import the C++ library from. | |
| run: | | |
| export FMM_PYTHON_DIR="$(pwd)" && pip install python/.[test] -v && pip install pytest-subtests | |
| shell: bash | |
| - name: Python Build and Install (PyPy) | |
| if: contains(matrix.python-version, 'pypy') | |
| # SciPy does not ship PyPy wheels, so to avoid building scipy from source each time instead only | |
| # install numpy and skip the tests that require scipy. | |
| run: | | |
| export FMM_PYTHON_DIR="$(pwd)" && pip install python/. -v && pip install numpy pytest pytest-subtests | |
| shell: bash | |
| - name: Python Test | |
| run: | | |
| cd python/tests | |
| pytest | |
| - name: Python Test with Coverage | |
| if: contains(matrix.os, 'ubuntu') | |
| run: | | |
| pip install pytest-cov | |
| cd python/tests | |
| pytest --cov=fast_matrix_market --cov-report term --cov-report=xml | |
| - name: Upload Coverage to Codecov | |
| if: ${{ contains(matrix.os, 'ubuntu') && !contains(matrix.python-version, 'pypy') }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| gcov: true | |
| gcov_include: include/* # C++ coverage | |
| # directory: python/tests # Python coverage. This seems to confuse codecov, disable for now. | |
| ################################################################################# | |
| linux_32bit: | |
| name: Tests on 32-bit Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: build + test | |
| run: | | |
| set -euo pipefail | |
| docker pull quay.io/pypa/manylinux2014_i686 | |
| docker run -v $(pwd):/fmm --platform=linux/i386 quay.io/pypa/manylinux2014_i686 /bin/bash -c "cd /fmm && \ | |
| uname -a && \ | |
| cmake -S . -B build -DCMAKE_BUILD_TYPE=Debug -DFAST_MATRIX_MARKET_TEST=ON && \ | |
| cmake --build build --config Debug && \ | |
| cd build && \ | |
| ctest -C Debug --output-on-failure --verbose && \ | |
| cd ../ && \ | |
| python3.9 -m venv env && \ | |
| source env/bin/activate && \ | |
| python -m pip install python/ -v &&\ | |
| python -m pip install --only-binary :all: numpy scipy pytest pytest-subtests && \ | |
| cd python/tests/ && \ | |
| pytest -v" |