DOC: Add the R bindings #357
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| name: Tests on ${{ matrix.os }} - ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.7', '3.11', 'pypy-3.9'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Integrations (Ubuntu) | |
| if: contains(matrix.os, 'ubuntu') | |
| run: sudo apt-get install -y libarmadillo-dev | |
| - name: Install GraphBLAS (ubuntu) | |
| if: contains(matrix.os, 'ubuntu') | |
| # Install pre-built GraphBLAS from conda-forge because GraphBLAS packages in Ubuntu repos are too old to be useful. | |
| # See LAGraph's workflow: https://github.com/GraphBLAS/LAGraph/blob/stable/.github/workflows/build.yml | |
| run: | | |
| mkdir -p grb | |
| cd grb | |
| wget --quiet https://anaconda.org/conda-forge/graphblas/7.4.4/download/linux-64/graphblas-7.4.4-hcb278e6_0.conda | |
| unzip graphblas-7.4.4-hcb278e6_0.conda | |
| tar xvf pkg-graphblas-7.4.4-hcb278e6_0.tar.zst | |
| cd .. | |
| echo "FMM_CMAKE_FLAGS=-DCMAKE_MODULE_PATH=${{ github.workspace }}/grb/lib/cmake/SuiteSparse -DGraphBLAS_ROOT=${{ github.workspace }}/grb/" >> $GITHUB_ENV | |
| - name: Install GraphBLAS (macOS) | |
| if: contains(matrix.os, 'macos') | |
| # install suite-sparse which includes GraphBLAS and also FindGraphBLAS.cmake | |
| run: brew install suite-sparse | |
| - name: Configure | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| run: | | |
| cmake -S . -B build -DCMAKE_BUILD_TYPE=Debug -DFAST_MATRIX_MARKET_TEST=ON -DFAST_MATRIX_MARKET_TEST_COVERAGE=ON ${{ env.FMM_CMAKE_FLAGS }} | |
| - name: Build | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| env: | |
| CMAKE_BUILD_PARALLEL_LEVEL: 2 | |
| run: | | |
| cmake --build build --config Debug | |
| - name: Test | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| run: | | |
| cd build | |
| ctest -C Debug --output-on-failure --verbose | |
| - name: Python Build and Install | |
| if: ${{ !contains(matrix.python-version, 'pypy') }} | |
| # On some platforms pip uses a temporary build directory but only copies the python/ directory there. | |
| # This breaks the relative symbolic links to the C++ library. Workaround is to pass the checkout directory | |
| # as an environment variable so CMakeLists.txt can read it and know where to import the C++ library from. | |
| run: | | |
| export FMM_PYTHON_DIR="$(pwd)" && pip install python/.[test] -v && pip install pytest-subtests | |
| shell: bash | |
| - name: Python Build and Install (PyPy) | |
| if: contains(matrix.python-version, 'pypy') | |
| # SciPy does not ship PyPy wheels, so to avoid building scipy from source each time instead only | |
| # install numpy and skip the tests that require scipy. | |
| run: | | |
| export FMM_PYTHON_DIR="$(pwd)" && pip install python/. -v && pip install numpy pytest pytest-subtests | |
| shell: bash | |
| - name: Python Test | |
| run: | | |
| cd python/tests | |
| pytest | |
| - name: Python Test with Coverage | |
| if: contains(matrix.os, 'ubuntu') | |
| run: | | |
| pip install pytest-cov | |
| cd python/tests | |
| pytest --cov=fast_matrix_market --cov-report term --cov-report=xml | |
| - name: Upload Coverage to Codecov | |
| if: ${{ contains(matrix.os, 'ubuntu') && !contains(matrix.python-version, 'pypy') }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| gcov: true | |
| gcov_include: include/* # C++ coverage | |
| # directory: python/tests # Python coverage. This seems to confuse codecov, disable for now. | |
| ################################################################################# | |
| linux_32bit: | |
| name: Tests on 32-bit Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: build + test | |
| run: | | |
| set -euo pipefail | |
| docker pull quay.io/pypa/manylinux2014_i686 | |
| docker run -v $(pwd):/fmm --platform=linux/i386 quay.io/pypa/manylinux2014_i686 /bin/bash -c "cd /fmm && \ | |
| uname -a && \ | |
| cmake -S . -B build -DCMAKE_BUILD_TYPE=Debug -DFAST_MATRIX_MARKET_TEST=ON && \ | |
| cmake --build build --config Debug && \ | |
| cd build && \ | |
| ctest -C Debug --output-on-failure --verbose && \ | |
| cd ../ && \ | |
| python3.9 -m venv env && \ | |
| source env/bin/activate && \ | |
| python -m pip install python/ -v &&\ | |
| python -m pip install --only-binary :all: numpy scipy pytest pytest-subtests && \ | |
| cd python/tests/ && \ | |
| pytest -v" |