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Releases: amael-ls/code_article3

Multi-species spatial version

08 Sep 00:27
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Pre-release

The program is now spatialised and is working with multiple species. There might still be some errors in the algorithm. What remains to be done:
- Compute the integral of the kernel and add this to Patch::dispersal. This implies the class Dispersal which probably needs to be redone
- Create a Except_Dispersal class which check that the integral of the kernel over Gamma is <= 1 (important for Patch::m_localProducedSeeds)
- Correction of the current bugs/improvements
- Test the program when the kernel is a dirac with an analytical solution

Spatial version without reproduction

30 Aug 01:10
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The program is now spatially explicit, but some work remains to be done:

  • Reproduction:
    • Forest must find neighbours of each patch
    • For each patch, either there is already a pop or not (if not, create a new one)
  • Environment:
    • Env must know which pop owns it

Non-fully spatial

10 Jul 21:00
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Non-fully spatial Pre-release
Pre-release

Contains the main files for spatial version. The objects are spatialised, but neither the dynamics (advection equation), nor reproduction are ready.

To do:

  1. Add double localSeedsProduced and double localSeedBank to population.h++
  2. Add kernel (Maybe create a new object to describe reachable cells from a source for each species, and each cell of the lattice)
  3. Transfer the localSeedBank to new cohort