Releases: amael-ls/code_article3
Multi-species spatial version
The program is now spatialised and is working with multiple species. There might still be some errors in the algorithm. What remains to be done:
- Compute the integral of the kernel and add this to Patch::dispersal
. This implies the class Dispersal which probably needs to be redone
- Create a Except_Dispersal
class which check that the integral of the kernel over Gamma is <= 1 (important for Patch::m_localProducedSeeds
)
- Correction of the current bugs/improvements
- Test the program when the kernel is a dirac with an analytical solution
Spatial version without reproduction
The program is now spatially explicit, but some work remains to be done:
- Reproduction:
- Forest must find neighbours of each patch
- For each patch, either there is already a pop or not (if not, create a new one)
- Environment:
- Env must know which pop owns it
Non-fully spatial
Contains the main files for spatial version. The objects are spatialised, but neither the dynamics (advection equation), nor reproduction are ready.
To do:
- Add double localSeedsProduced and double localSeedBank to population.h++
- Add kernel (Maybe create a new object to describe reachable cells from a source for each species, and each cell of the lattice)
- Transfer the localSeedBank to new cohort