Merge pull request #248 from andersen-lab/measles_documentation

Measles documentation

docs/data/measles-reference.fasta

@@ -0,0 +1,266 @@
+>NC_001498.1
+ACCAAACAAAGTTGGGTAAGGATAGATCAATCAATGATCATATTCTAGTACACTTAGGAT
+TCAAGATCCTATTATCAGGGACAAGAGCAGGATTAGGGATATCCGAGATGGCCACACTTT
+TGAGGAGCTTAGCATTGTTCAAAAGAAACAAGGACAAACCACCCATTACATCAGGATCCG
+GTGGAGCCATCAGAGGAATCAAACACATTATTATAGTACCAATTCCTGGAGATTCCTCAA
+TTACCACTCGATCCAGACTACTGGACCGGTTGGTCAGGTTAATTGGAAACCCGGATGTGA
+GCGGGCCCAAACTAACAGGGGCACTAATAGGTATATTATCCTTATTTGTGGAGTCTCCAG
+GTCAATTGATTCAGAGGATCACCGATGACCCTGACGTTAGCATCAGGCTGTTAGAGGTTG
+TTCAGAGTGACCAGTCACAATCTGGCCTTACCTTCGCATCAAGAGGTACCAACATGGAGG
+ATGAGGCGGACCAATACTTTTCACATGATGATCCAAGCAGTAGTGATCAATCCAGGTCCG
+GATGGTTCGAGAACAAGGAAATCTCAGATATTGAAGTGCAAGACCCTGAGGGATTCAACA
+TGATTCTGGGTACCATTCTAGCCCAGATCTGGGTCTTGCTCGCAAAGGCGGTTACGGCCC
+CAGACACGGCAGCTGATTCGGAGCTAAGAAGGTGGATAAAGTACACCCAACAAAGAAGGG
+TAGTTGGTGAATTTAGATTGGAGAGAAAATGGTTGGATGTGGTGAGGAACAGGATTGCCG
+AGGACCTCTCTTTACGCCGATTCATGGTGGCTCTAATCCTGGATATCAAGAGGACACCCG
+GGAACAAACCTAGGATTGCTGAAATGATATGTGACATTGATACATATATCGTAGAGGCAG
+GATTAGCCAGTTTTATCCTGACTATTAAGTTTGGGATAGAAACTATGTATCCTGCTCTTG
+GACTGCATGAATTTGCTGGTGAGTTATCCACACTTGAGTCCTTGATGAATCTTTACCAGC
+AAATGGGAGAAACTGCACCCTACATGGTAATCCTAGAGAACTCAATTCAGAACAAGTTCA
+GTGCAGGATCATACCCTCTGCTCTGGAGCTATGCCATGGGAGTAGGAGTGGAACTTGAAA
+ACTCCATGGGAGGTTTGAACTTTGGTCGATCTTACTTTGATCCAGCATATTTTAGATTAG
+GGCAAGAGATGGTGAGGAGGTCAGCTGGAAAGGTCAGTTCCACATTGGCATCCGAACTCG
+GTATCACTGCCGAGGATGCAAGGCTTGTTTCAGAGATTGCAATGCATACTACTGAGGACA
+GGATCAGTAGAGCGGTCGGACCCAGACAAGCCCAAGTGTCATTTCTACACGGTGATCAAA
+GTGAGAATGAGCTACCAGGATTGGGGGGCAAGGAAGATAGGAGGGTCAAACAGGGTCGGG
+GAGAAGCCAGGGAGAGCTACAGAGAAACCGGGTCCAGCAGAGCAAGTGATGCGAGAGCTG
+CCCATCCTCCAACCAGCATGCCCCTAGACATTGACACTGCATCGGAGTCAGGCCAAGATC
+CGCAGGACAGTCGAAGGTCAGCTGACGCCCTGCTCAGGCTGCAAGCCATGGCAGGAATCT
+TGGAAGAACAAGGCTCAGACACGGACACCCCTAGGGTATACAATGACAGAGATCTTCTAG
+ACTAGGTGCGAGAGGCCGAGGACCAGAACAACATCCGCCTACCCTCCATCATTGTTATAA
+AAAACTTAGGAACCAGGTCCACACAGCCGCCAGCCAACCAACCATCCACTCCCACGACTG
+GAGCCGATGGCAGAAGAGCAGGCACGCCATGTCAAAAACGGACTGGAATGCATCCGGGCT
+CTCAAGGCCGAGCCCATCGGCTCACTGGCCGTCGAGGAAGCCATGGCAGCATGGTCAGAA
+ATATCAGACAACCCAGGACAGGACCGAGCCACCTGCAAGGAAGAGGAGGCAGGCAGTTCG
+GGTCTCAGCAAACCATGCCTCTCAGCAATTGGATCAACTGAAGGCGGTGCACCTCGCATC
+CGCGGTCAGGGATCTGGAGAAAGCGATGACGACGCTGAAACTTTGGGAATCCCCTCAAGA
+AATCTCCAGGCATCAAGCACTGGGTTACAGTGTTATCATGTTTATGATCACAGCGGTGAA
+GCGGTTAAGGGAATCCAAGATGCTGACTCTATCATGGTTCAATCAGGCCTTGATGGTGAT
+AGCACCCTCTCAGGAGGAGACGATGAATCTGAAAACAGCGATGTGGATATTGGCGAACCT
+GATACCGAGGGATATGCTATCACTGACCGGGGATCTGCTCCCATCTCTATGGGGTTCAGG
+GCTTCTGATGTTGAAACTGCAGAAGGAGGGGAGATCCACGAGCTCCTGAAACTCCAATCC
+AGAGGCAACAACTTTCCGAAGCTTGGGAAAACTCTCAATGTTCCTCCGCCCCCGAACCCC
+AGTAGGGCCAGCACTTCCGAGACACCCATTAAAAAGGGCACAGACGCGAGATTGGCCTCA
+TTTGGAACGGAGATCGCGTCTTTATTGACAGGTGGTGCAACCCAATGTGCTCGAAAGTCA
+CCCTCGGAACCATCAGGGCCAGGTGCACCTGCGGGGAATGTCCCCGAGTGTGTGAGCAAT
+GCCGCACTGATACAGGAGTGGACACCCGAATCTGGTACCACAATCTCCCCGAGATCCCAG
+AATAATGAAGAAGGGGGAGACTATTATGATGATGAGCTGTTCTCCGATGTCCAAGACATC
+AAAACAGCCTTGGCCAAAATACACGAGGATAATCAGAAGATAATCTCCAAGCTAGAATCA
+TTGCTGTTATTGAAGGGAGAAGTTGAGTCAATTAAGAAGCAGATCAACAGGCAAAATATC
+AGCATATCCACCCTGGAAGGACACCTCTCAAGCATCATGATTGCCATTCCTGGACTTGGG
+AAGGATCCCAACGACCCCACTGCAGATGTCGAACTCAATCCCGACCTGAAACCCATCATA
+GGCAGAGATTCAGGCCGAGCACTGGCCGAAGTTCTCAAGAAGCCCGTTGCCAGCCGACAA
+CTCCAGGGAATGACTAATGGACGGACCAGTTCCAGAGGACAGCTGCTGAAGGAATTTCAA
+CTAAAGCCGATCGGGAAAAAGGTGAGCTCAGCCGTCGGGTTTGTTCCTGACACCGGCCCT
+GCATCACGCAGTGTAATCCGCTCCATTATAAAATCCAGCCGGCTAGAGGAGGATCGGAAG
+CGTTACCTGATGACTCTCCTTGATGATATCAAAGGAGCCAACGATCTTGCCAAGTTCCAC
+CAGATGCTGATGAAGATAATAATGAAGTAGCTACAGCTCAACTTACCTGCCAACCCCATG
+CCAGTCGACCTAATTAGTACAACCTAAATCCATTATAAAAAACTTAGGAGCAAAGTGATT
+GCCTCCTAAGTTCCACAATGACAGAGATCTACGATTTCGACAAGTCGGCATGGGACATCA
+AAGGGTCGATCGCTCCGATACAACCTACCACCTACAGTGATGGCAGGCTGGTGCCCCAGG
+TCAGAGTCATAGATCCTGGTCTAGGTGATAGGAAGGATGAATGCTTTATGTACATGTTTC
+TGCTGGGGGTTGTTGAGGACAGCGATCCCCTAGGGCCTCCAATCGGGCGAGCATTCGGGT
+CCCTGCCCTTAGGTGTTGGTAGATCCACAGCAAAACCCGAGGAACTCCTCAAAGAGGCCA
+CTGAGCTTGACATAGTTGTTAGACGTACAGCAGGGCTCAATGAAAAACTGGTGTTCTACA
+ACAACACCCCACTAACCCTCCTCACACCTTGGAGAAAGGTCCTAACAACAGGGAGTGTCT
+TCAATGCAAACCAAGTGTGCAATGCGGTTAATCTAATACCGCTGGACACCCCGCAGAGGT
+TCCGTGTTGTTTATATGAGCATCACCCGTCTTTCGGATAACGGGTATTACACCGTTCCCA
+GAAGAATGCTGGAATTCAGATCGGTCAATGCAGTGGCCTTCAACCTGCTAGTGACCCTTA
+GGATTGACAAGGCGATTGGCCCTGGGAAGATCATCGACAATGCAGAGCAACTTCCTGAGG
+CAACATTTATGGTCCACATCGGGAACTTCAGGAGAAAGAAGAGTGAAGTCTACTCTGCCG
+ATTATTGCAAAATGAAAATCGAAAAGATGGGCCTGGTTTTTGCACTTGGTGGGATAGGGG
+GCACCAGTCTTCACATTAGAAGCACAGGCAAAATGAGCAAGACTCTCCATGCACAACTCG
+GGTTCAAGAAGACCTTATGTTACCCACTGATGGATATCAATGAAGACCTTAATCGGTTAC
+TCTGGAGGAGCAGATGCAAGATAGTAAGAATCCAGGCAGTTTTGCAGCCATCAGTTCCTC
+AAGAATTCCGCATTTACGACGACGTGATCATAAATGATGACCAAGGACTATTCAAAGTTC
+TGTAGACCGCAGTGCCCAGCAATACCCGAAAACGACCCCCCTCATAATGACAGCCAGAAG
+GCCCGGACAAAAAAGCCCCCTCCAGAAGACTCCACGGACCAAGCGAGAGGCCAGCCAGCA
+GCCGACAGCAAGTGTGGACACCAGGCGGCCCAAGCACAGAACAGCCCCGACACAAGGCCA
+CCACCAGCCATCCCAATCTGCGTCCTCCTCGTGGGACCCCCGAGGACCAACCCCGAAGGT
+CGCTCCGAACACAGACCACCAACCGCATCCCCACAGCTCCCGGGAAAGGAACCCCCAGCA
+ACTGGAAGGCCCCTCCCCCCCTCCCCCAACGCAAGAACCCCACAACCGAACCGCACAAGC
+GACCGAGGTGACCCAACCGCAGGCATCCGACTCCTTAGACAGATCCTCTCCCCCCGGCAT
+ACTAAACAAAACTTAGGGCCAAGGAACACACACACTCGACAGAACCCAGACCCCGGCCCG
+CGGCACCGCGCCCCCACCCCCCGAAAACCAGAGGGAGCCCCCAACCAAACCCGCCGGCCC
+CCCCGGTGCCCACAGGTAGGCACACCAACCCCCGACCAGACCCAGCACCCAGCCACCGAC
+AATCCAAGACGGGGGGCCCCCCCCAAAAAAAGGCCCCCAGGGGCCGACAGCCAGCATCGC
+GAGGAAGCACACCCACCCCACACACGACCACGGCAACCGAACCAGAGTCCAGACCACCCT
+GGGCCACCAGCTCCCAGACTCGGCCATCACCCCGCAAAAAGGAAAGGCCACAACCCGCGC
+ACCCCAGCCCCGATCCGGCGGGCAGCCACTCAACCCGAACCAGCACCCAAGAGCGATCCC
+TGGGGGACCCCCAAACCGCAAAAGACATCAGTATCCCACAGCCTCTCCAAGTCCCCCGGT
+CTCCTCCTCTTCTCGAAGGGACCAAAAGATCAATCCACCACATCCGACGACACTCAATTC
+CCCACCCCCAAAGGAGACACCGGGAATCCCAGAATCAAGACTCATCCAGTGTCCATCATG
+GGTCTCAAGGTGAACGTCTCTGCCATATTCATGGCAGTACTGTTAACTCTCCAAACACCC
+ACCGGTCAAATCCATTGGGGCAATCTCTCTAAGATAGGGGTGGTAGGGATAGGAAGTGCA
+AGCTACAAAGTTATGACTCGTTCCAGCCATCAATCATTGGTCATAAAATTAATGCCCAAT
+ATAACTCTCCTCAATAACTGCACGAGGGTAGAGATCGCAGAATACAGGAGACTACTGAGA
+ACAGTTTTGGAACCAATTAGAGATGCACTTAATGCAATGACCCAGAATATAAGACCGGTT
+CAGAGTGTAGCTTCAAGTAGGAGACACAAGAGATTTGCGGGAGTTGTCCTGGCAGGTGCG
+GCCCTAGGCGTTGCCACAGCTGCTCAGATAACAGCCGGCATTGCACTTCACCAGTCCATG
+CTGAACTCTCAAGCCATCGACAATCTGAGAGCAAGCCTGGAAACTACTAATCAGGCAATT
+GAGGCAATCAGACAAGCAGGGCAGGAGATGATATTGGCTGTTCAGGGTGTCCAAGACTAC
+ATCAATAATGAGCTGATACCGTCTATGAACCAACTATCTTGTGATTTAATCGGCCAGAAG
+CTAGGGCTCAAATTGCTCAGATACTATACAGAAATCCTGTCATTATTTGGCCCCAGCTTA
+CGGGACCCCATATCTGCGGAGATATCCATCCAGGCTTTGAGCTATGCGCTTGGAGGAGAT
+ATCAATAAGGTATTAGAAAAGCTCGGATACAGTGGAGGTGATTTACTGGGCATCTTAGAG
+AGCAGAGGAATAAAGGCCCGGATAACTCACGTCGACACAGAGTCCTACTTCATTGTACTC
+AGTATAGCCTATCCGACGCTGTCCGAGATTAAGGGGGTGATTGTCCACCGGCTAGAGGGG
+GTCTCGTACAATATAGGCTCTCAAGAGTGGTATACCACTGTGCCCAAGTATGTTGCAACC
+CAAGGGTACCTTATCTCGAATTTTGATGAGTCATCGTGTACTTTCATGCCAGAGGGGACT
+GTGTGCAGCCAAAATGCCTTGTACCCGATGAGTCCTCTGCTCCAAGAATGCCTCCGGGGG
+TCCACCAAGTCCTGTGCTCGTACACTCGTATCCGGGTCTTTTGGGAACCGGTTCATTTTA
+TCACAAGGGAACCTAATAGCCAATTGTGCATCAATCCTCTGCAAGTGTTACACAACAGGA
+ACGATCATTAATCAAGACCCTGACAAGATCCTAACATACATTGCTGCCGATCACTGCCCG
+GTGGTCGAGGTGAACGGTGTGACCATCCAAGTCGGGAGCAGGAGGTATCCGGACGCGGTG
+TACCTGCACAGAATTGACCTCGGTCCTCCCATATCATTGGAGAGGTTGGACGTAGGGACA
+AATCTGGGGAATGCAATTGCTAAGTTGGAGGATGCCAAGGAATTGTTGGAGTCATCGGAC
+CAGATATTGAGGAGTATGAAAGGTTTATCGAGCACTAGCATAGTTTACATCCTGATTGCA
+GTGTGTCTTGGAGGGTTGATAGGGATCCCCGCTTTAATATGTTGCTGCAGGGGGCGCTGT
+AACAAAAAGGGAGAACAAGTTGGTATGTCAAGACCAGGCCTAAAGCCTGATCTTACAGGG
+ACATCAAAATCCTATGTAAGGTCGCTCTGATCCTCTACAACTCTTGAAACACAGATTTCC
+CACAAGTCTCCTCTTCGTCATCAAGCAACCACCGCATCCAGCATCAAGCCCACCTGAAAT
+TGTCTCCGGCTTCCCTCTGGCCGAACGATATCGGTAGTTAATTAAAACTTAGGGTGCAAG
+ATCATCCACAATGTCACCACAACGAGACCGAATAAATGCCTTCTACAAAGACAACCCACA
+TCCTAAGGGAAGTAGGATAGTTATTAACAGAGAACATCTTATGATTGATAGACCTTATGT
+TTTGCTGGCTGTTCTATTCGTCATGTTTCTGAGCTTGATCGGGTTGCTAGCCATTGCAGG
+CATTAGACTCCATCGTGCAGCCATCTACACCGCAGAGATCCATAAGAGCCTCAGCACCAA
+TCTAGATGTAACTAACTCGATCGAGCATCAGGTCAAGGACGTGCTGACACCACTCTTCAA
+GATCATTGGTGATGAAGTGGGCCTGAGGACACCTCAGAGATTCACTGACCTAGTGAAATT
+CATCTCTGACAAAATTAAATTCCTTAATCCGGATAGGGAGTACGACTTCAGAGATCTCAC
+TTGGTGTATCAACCCGCCAGAGAGAATCAAATTGGATTATGATCAATACTGTGCAGATGT
+GGCTGCTGAAGAACTCATGAATGCATTGGTGAACTCAACTCTACTGGAGGCCAGGGCAAC
+CAATCAGTTCCTAGCTGTCTCAAAGGGAAACTGCTCAGGGCCCACTACAATCAGAGGTCA
+ATTCTCAAACATGTCGCTGTCCCTGTTGGACTTGTATTTAAGTCGAGGTTACAATGTGTC
+ATCTATAGTCACTATGACATCCCAGGGAATGTACGGGGGAACTTACCTAGTGGGAAAGCC
+TAATCTGAGCAGTAAAGGGTCAGAGTTGTCACAACTGAGCATGCACCGAGTGTTTGAAGT
+AGGGGTTATCAGAAATCCGGGTTTGGGGGCTCCGGTGTTCCATATGACAAACTATTTTGA
+GCAACCAGTCAGTAATGATTTCAGCAACTGCATGGTGGCTTTGGGGGAGCTTAAATTCGC
+AGCCCTCTGTCACAGGGAAGATTCTATCACAATTCCCTATCAGGGGTCAGGGAAAGGTGT
+CAGCTTCCAGCTCGTCAAGCTAGGTGTCTGGAAATCCCCAACCGACATGCGATCCTGGGT
+CCCCCTATCAACGGATGATCCAGTGATAGATAGGCTTTACCTCTCATCTCACAGAGGTGT
+TATCGCTGACAATCAAGCAAAATGGGCTGTCCCGACAACACGGACAGATGACAAGTTGCG
+AATGGAGACATGCTTCCAGCAGGCGTGTAAGGGTAAAAACCAAGCACTCTGCGAGAATCC
+CGAGTGGGCACCATTGAAGGATAACAGGATTCCTTCATACGGGGTCTTGTCTGTTAATCT
+GAGTCTGACAGTTGAGCTTAAAATCAAAATTGCTTCAGGATTCGGGCCATTGATCACACA
+CGGTTCAGGGATGGACCTATACAAAACCAACCACAACAATGTGTATTGGCTGACTATCCC
+GCCAATGAAGAACCTAGCCTTAGGTGTAATCAACACATTGGAGTGGATACCGAGATTCAA
+GGTTAGTCCCAACCTCTTCACTGTTCCAATCAAGGAAGCAGGCGAGGACTGCCATGCCCC
+AACATACCTACCTGCGGAGGTGGATGGTGATGTCAAACTCAGTTCCAATCTGGTAATTCT
+ACCTGGTCAGGATCTCCAATATGTTTTGGCAACCTACGATACTTCCAGGGTTGAACATGC
+TGTGGTTTATTATGTTTACAGCCCAAGCCGCTCATTTTCTTACTTTTATCCTTTTAGGTT
+GCCTATAAAGGGGGTCCCAATCGAATTACAAGTGGAATGCTTCACATGGGACAAAAAACT
+CTGGTGCCGTCACTTCTGTGTGCTTGCGGACTCAGAATCTGGTGGACATATCACTCACTC
+TGGGATGGTGGGCATGGGAGTCAGCTGCACAGTCACTCGGGAAGATGGAACCAATCGCAG
+ATAGGGCTGCCAGTGAACCGATCACATGATGTCACCCAGACATCAGGCATACCCACTAGT
+GTGAAATAGACATCAGAATTAAGAAAAACGTAGGGTCCAAGTGGTTTCCCGTTATGGACT
+CGCTATCTGTCAACCAGATCTTATACCCTGAAGTTCACCTAGATAGCCCGATAGTTACCA
+ATAAGATAGTAGCTATCCTGGAGTATGCTCGAGTCCCTCACGCTTACAGCCTGGAGGACC
+CTACACTGTGTCAGAACATCAAGCACCGCCTAAAAAACGGATTCTCCAACCAAATGATTA
+TAAACAATGTGGAAGTTGGGAATGTCATCAAGTCCAAGCTTAGGAGTTATCCGGCCCACT
+CTCATATTCCATATCCAAATTGTAATCAGGATTTATTTAACATAGAAGACAAAGAGTCAA
+CAAGGAAGATCCGTGAGCTCCTAAAAAAGGGAAATTCGCTGTACTCCAAAGTCAGTGATA
+AGGTTTTCCAATGCCTGAGGGACACTAACTCACGGCTTGGCCTAGGCTCCGAATTGAGGG
+AGGACATCAAGGAGAAAATTATTAACTTGGGAGTTTACATGCACAGCTCCCAATGGTTTG
+AGCCCTTTCTGTTTTGGTTTACAGTCAAGACTGAGATGAGGTCAGTGATTAAATCACAAA
+CCCATACTTGCCATAGGAGGAGACACACACCTGTATTCTTCACTGGTAGTTCAGTTGAGC
+TGTTAATCTCTCGTGACCTTGTTGCTATAATCAGTAAGGAGTCTCAACATGTATATTACC
+TGACGTTTGAACTGGTTTTGATGTATTGTGATGTCATAGAGGGGAGGTTAATGACAGAGA
+CCGCTATGACCATTGATGCTAGGTATGCAGAACTTCTAGGAAGAGTCAGATACATGTGGA
+AACTGATAGATGGTTTCTTCCCTGCACTCGGGAATCCAACTTATCAAATTGTAGCCATGC
+TGGAGCCACTTTCACTTGCTTACCTGCAACTGAGGGATATAACAGTAGAACTCAGAGGTG
+CTTTCCTTAACCACTGCTTTACTGAAATACATGATGTTCTTGACCAAAACGGGTTTTCTG
+ATGAAGGTACTTATCATGAGTTAATTGAAGCCCTAGATTACATTTTCATAACTGATGACA
+TACATCTGACAGGGGAGATTTTCTCATTTTTCAGAAGTTTCGGCCACCCCAGACTTGAAG
+CAGTAACGGCTGCTGAAAATGTCAGGAAATACATGAATCAGCCTAAAGTCATTGTGTATG
+AGACTCTGATGAAAGGTCATGCCATATTTTGTGGAATCATAATCAACGGCTATCGTGACA
+GGCACGGAGGCAGTTGGCCACCCCTGACCCTCCCCCTGCATGCTGCAGACACAATCCGGA
+ATGCTCAAGCTTCAGGTGAAGGGTTAACACATGAGCAGTGCGTTGATAACTGGAAATCAT
+TTGCTGGAGTGAGATTTGGCTGTTTTATGCCTCTTAGCCTGGACAGTGATCTGACAATGT
+ACCTAAAGGACAAGGCACTTGCTGCTCTCCAAAGGGAATGGGATTCAGTTTACCCGAAAG
+AGTTCCTGCGTTACGATCCTCCCAAGGGAACCGGGTCACGGAGGCTTGTAGATGTTTTCC
+TTAATGATTCGAGCTTTGACCCATATGATATGATAATGTATGTCGTAAGTGGAGCCTACC
+TCCATGACCCTGAGTTCAACCTGTCTTACAGCCTGAAAGAAAAGGAGATCAAGGAAACAG
+GTAGACTTTTCGCTAAAATGACTTACAAAATGAGGGCATGCCAAGTGATCGCTGAAAATC
+TAATCTCAAACGGGATTGGCAAGTATTTTAAGGACAATGGGATGGCCAAGGATGAGCACG
+ATTTGACTAAGGCACTCCACACTCTGGCTGTCTCAGGAGTCCCCAAAGATCTCAAAGAAA
+GTCACAGGGGGGGGCCAGTCTTAAAAACCTACTCCCGAAGCCCAGTCCACACAAGTACCA
+GGAACGTTAAAGCAGAAAAAGGGTTTGTAGGATTCCCTCATGTAATTCGGCAGAATCAAG
+ACACTGATCATCCGGAGAATATAGAAACCTACGAGACAGTCAGCGCATTTATCACGACTG
+ATCTCAAGAAGTACTGCCTTAATTGGAGATATGAGACCATCAGCTTATTTGCACAGAGGC
+TAAATGAGATTTACGGATTACCCTCATTTTTTCAGTGGCTGCATAAGAGGCTTGAAACCT
+CTGTCCTCTATGTAAGTGACCCTCATTGCCCCCCCGACCTTGACGCCCATGTCCCGTTAT
+GCAAAGTCCCCAATGACCAAATCTTCATCAAGTACCCTATGGGAGGTATAGAAGGGTATT
+GTCAGAAGCTGTGGACCATCAGCACCATTCCCTACTTATACCTGGCTGCTTATGAGAGCG
+GGGTAAGGATTGCTTCGTTAGTGCAAGGGGACAATCAGACCATAGCCGTAACAAAAAGGG
+TACCCAGCACATGGCCTTACAACCTTAAGAAACGGGAAGCTGCTAGAGTAACTAGAGATT
+ACTTTGTAATTCTTAGGCAAAGGCTACATGACATTGGCCATCACCTCAAGGCAAATGAGA
+CAATTGTTTCATCACATTTTTTTGTCTATTCAAAAGGAATATATTATGATGGGCTACTTG
+TGTCCCAATCACTCAAGAGCATCGCAAGATGTGTATTCTGGTCAGAGACTATAGTTGATG
+AAACAAGGGCAGCATGCAGTAATATTGCTACAACAATGGCTAAAAGCATCGAGAGAGGTT
+ATGACCGTTATCTTGCATATTCCCTGAACGTCCTAAAAGTGATACAGCAAATTTTGATCT
+CTCTTGGCTTCACAATCAATTCAACCATGACCCGAGATGTAGTCATACCCCTCCTCACAA
+ACAACGATCTCTTAATAAGGATGGCACTGTTGCCCGCTCCTATTGGGGGGATGAATTATC
+TGAATATGAGCAGGCTGTTTGTCAGAAACATCGGTGATCCAGTAACATCATCAATTGCTG
+ATCTCAAGAGAATGATTCTCGCATCACTAATGCCTGAAGAGACCCTCCATCAAGTAATGA
+CACAACAACCGGGGGACTCTTCATTCCTAGACTGGGCTAGCGACCCTTACTCAGCAAATC
+TTGTATGCGTCCAGAGCATCACTAGACTCCTCAAGAACATAACTGCAAGGTTTGTCCTAA
+TCCATAGTCCAAACCCAATGTTAAAAGGGTTATTCCATGATGACAGTAAAGAAGAGGACG
+AGAGACTGGCGGCATTCCTCATGGACAGGCATATTATAGTACCTAGGGCAGCTCATGAAA
+TCCTGGATCATAGTGTCACAGGGGCAAGAGAGTCTATTGCAGGCATGCTAGATACCACAA
+AAGGCCTGATTCGAGCCAGCATGAGGAAGGGGGGGTTAACCTCTCGAGTGATAACCAGAT
+TGTCCAATTATGACTATGAACAATTTAGAGCAGGGATGGTGCTATTGACAGGAAGAAAGA
+GAAATGTCCTCATTGACAAAGAGTCATGTTCAGTGCAGCTGGCTAGAGCCCTAAGAAGCC
+ATATGTGGGCAAGACTAGCTCGAGGACGGCCTATTTACGGCCTTGAGGTCCCTGATGTAC
+TAGAATCTATGCGAGGCCACCTTATTCGGCGTCATGAGACATGTGTCATCTGCGAGTGTG
+GATCAGTCAACTACGGATGGTTTTTTGTCCCCTCGGGTTGCCAACTGGATGATATTGACA
+AGGAAACATCATCCTTGAGAGTCCCATATATTGGTTCTACCACTGATGAGAGAACAGACA
+TGAAGCTCGCCTTCGTAAGAGCCCCAAGTAGATCCTTGCGATCTGCCGTTAGAATAGCAA
+CAGTGTACTCATGGGCTTACGGTGATGATGATAGCTCTTGGAACGAAGCCTGGTTGTTGG
+CAAGGCAAAGGGCCAATGTGAGCCTGGAGGAGCTAAGGGTGATCACTCCCATCTCGACTT
+CGACTAATTTAGCGCATAGGTTGAGGGATCGTAGCACTCAAGTGAAATACTCAGGTACAT
+CCCTTGTCCGAGTGGCAAGGTATACCACAATCTCCAACGACAATCTCTCATTTGTCATAT
+CAGATAAGAAGGTTGATACTAACTTTATATACCAACAAGGAATGCTTCTAGGGTTGGGTG
+TTTTAGAAACATTGTTTCGACTCGAGAAAGATACTGGATCATCTAACACGGTATTACATC
+TTCACGTCGAAACAGATTGTTGCGTGATCCCGATGATAGATCATCCCAGGATACCCAGCT
+CCCGCAAGCTAGAGCTGAGGGCAGAGCTATGTACCAACCCATTGATATATGATAATGCAC
+CTTTAATTGACAGAGATGCAACAAGGCTATACACCCAGAGCCATAGGAGGCACCTTGTGG
+AATTTGTTACATGGTCCACACCCCAACTATATCACATTCTAGCTAAGTCCACAGCACTAT
+CTATGATTGACCTGGTAACAAAATTTGAGAAGGACCATATGAATGAAATTTCAGCTCTCA
+TAGGGGATGACGATATCAATAGTTTCATAACTGAGTTTCTGCTTATAGAGCCAAGATTAT
+TCACCATCTACTTGGGCCAGTGTGCAGCCATCAATTGGGCATTTGATGTACATTATCATA
+GACCATCAGGGAAATATCAGATGGGTGAGCTGTTGTCTTCGTTCCTTTCTAGAATGAGCA
+AAGGAGTGTTTAAGGTGCTTGTCAATGCTCTAAGCCACCCAAAGATCTACAAGAAATTCT
+GGCATTGTGGTATTATAGAGCCTATCCATGGTCCTTCACTTGATGCTCAAAACTTGCACA
+CAACTGTGTGCAACATGGTTTACACATGCTATATGACCTACCTCGACCTGTTGTTGAATG
+AAGAGTTAGAAGAGTTCACATTTCTTTTGTGTGAAAGCGATGAGGATGTAGTACCGGACA
+GATTCGACAACATCCAGGCAAAACACTTGTGTGTTCTGGCAGATTTGTACTGTCAACCAG
+GGACCTGCCCACCGATTCGAGGTCTAAGGCCGGTAGAGAAATGTGCAGTTCTAACCGATC
+ATATCAAGGCAGAGGCTAGGTTATCTCCAGCAGGATCTTCGTGGAACATAAATCCAATTA
+TTGTAGACCATTACTCATGCTCTCTGACTTATCTCCGTCGAGGATCTATCAAACAGATAA
+GATTGAGAGTTGATCCAGGATTCATTTTTGACGCCCTCGCTGAGGTAAATGTCAGTCAGC
+CAAAGGTCGGCAGCAACAACATCTCAAATATGAGCATCAAGGATTTCAGACCTCCACACG
+ATGATGTTGCAAAATTGCTCAAAGATATCAACACAAGCAAGCACAATCTTCCCATTTCAG
+GGGGTAGTCTCGCCAATTATGAAATCCATGCTTTCCGCAGAATCGGGTTAAACTCATCTG
+CTTGCTACAAAGCTGTTGAGATATCAACATTAATTAGGAGATGCCTTGAGCCAGGGGAAG
+ACGGCTTGTTCTTGGGTGAGGGGTCGGGTTCTATGTTGATCACTTATAAGGAGATACTAA
+AACTAAACAAGTGCTTCTATAATAGTGGGGTTTCCGCCAATTCTAGATCTGGTCAAAGGG
+AATTAGCACCCTATCCCTCCGAAGTTGGCCTTGTCGAACACAGAATGGGAGTAGGTAATA
+TTGTCAAGGTGCTCTTTAACGGGAGGCCCGAAGTCACGTGGGTAGGCAGTATAGATTGCT
+TCAATTTCATAGTCAGTAATATCCCTACCTCTAGTGTGGGGTTTATCCATTCAGATATAG
+AGACCTTACCTAACAAAGATACTATAGAGAAGCTAGAGGAATTGGCAGCCATCTTATCGA
+TGGCTCTACTCCTTGGCAAAATAGGATCAATACTGGTGATTAAGCTTATGCCTTTCAGCG
+GGGATTTTGTTCAGGGATTTATAAGCTATGTAGGGTCTCATTATAGAGAAGTGAACCTTG
+TCTACCCTAGGTACAGCAACTTCATATCTACTGAATCTTATTTAGTTATGACAGATCTCA
+AAGCTAACCGGCTAATGAATCCTGAAAAGATCAAGCAGCAGATAATTGAATCATCTGTGC
+GGACTTCACCTGGACTTATAGGTCACATCCTATCCATTAAGCAACTAAGCTGCATACAAG
+CAATTGTGGGAGGCGCAGTTAGTAGAGGTGATATCAACCCTATTCTGAAAAAACTTACAC
+CTATAGAGCAGGTGCTGATCAGTTGCGGGTTGGCAATTAACGGACCTAAACTGTGCAAAG
+AATTAATCCACCATGATGTTGCCTCAGGGCAAGATGGATTGCTTAACTCTATACTCATCC
+TCTACAGGGAGTTGGCAAGATTCAAAGACAACCAAAGAAGTCAACAAGGGATGTTCCACG
+CTTACCCCGTATTGGTAAGTAGTAGGCAACGAGAACTTGTATCTAGGATCACTCGCAAAT
+TTTGGGGGCATATTCTTCTTTACTCCGGGAACAGAAAGTTGATAAATCGGTTTATCCAGA
+ATCTCAAGTCCGGTTATCTAGTACTAGACTTACACCAGAATATCTTCGTTAAGAATCTAT
+CCAAGTCAGAGAAACAGATTATTATGACGGGGGGTTTAAAACGTGAGTGGGTTTTTAAGG
+TAACAGTCAAGGAGACCAAAGAATGGTACAAGTTAGTCGGATACAGCGCTCTGATTAAGG
+ATTAATTGGTTGAACTCCGGAACCCTAATCCTGCCCTAGGTAGTTAGGCATTATTTGCAA
+TATATTAAAGAAAACTTTGAAAATACGAAGTTTCTATTCCCAGCTTTGTCTGGT

docs/index.rst

@@ -33,6 +33,7 @@ To ensure reproducibility of results, we provide old (timestamped) barcodes and
    src/wiki/command_line_workflow
    src/wiki/cryptic_variants
    src/wiki/custom_plotting_tutorial
+   src/wiki/freyja-measles
    src/wiki/custom-plots-with-R
    src/wiki/lineage_barcode_extract
    src/wiki/read_analysis_tutorial