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refactored README
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andreped authored Mar 8, 2023
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docker build -t fastpathology .
```

To add the plugin to DSA, choose `Upload new Task` under Slicer CLI Web Tasks in the DSA web UI. The plugin can then be used from the Analysis Page.
To add the plugin to DSA, choose `Upload new Task` under `Slicer CLI Web Tasks` in the DSA web UI. The plugin can then be used from the Analysis Page.


## 👏 Acknowledgements

The core was built based on [pyFAST](https://github.com/smistad/FAST), and the plugin was inspired by the plugins made for [MONAILabel](https://github.com/Project-MONAI/MONAILabel/tree/main/plugins/dsa) and [HistomicsTK](https://github.com/DigitalSlideArchive/HistomicsTK/tree/master/histomicstk/cli). Conversion of pyFAST's pyramidal TIFF annotations to HistomicsTK's JSON annotations was enabled using [OpenCV](https://github.com/opencv/opencv).

The plugin was made for the [Digital Slide Archive](https://github.com/DigitalSlideArchive/digital_slide_archive) which have developed an open and extremely robust and user-friendly archive web solution for large microscopy images. Building our methods on top of DSA was done with ease and credit to the developers such as [manthey](https://github.com/manthey) and [dgutman](https://github.com/dgutman) for addressing any issue and concerns we had at impressive speed!
The plugin was made for the [Digital Slide Archive](https://github.com/DigitalSlideArchive/digital_slide_archive) which has developed an open and extremely robust and user-friendly web solution for archiving, visualizing, processing, and annotating large microscopy images. Building our methods on top of DSA was done with ease and credit to the developers such as [manthey](https://github.com/manthey) and [dgutman](https://github.com/dgutman) for addressing any issue and concerns we had at impressive speed!


## ✨ License
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