Merge pull request #1 from ebranlard/noise

Noise

.github/actions/compile-and-test/Dockerfile

@@ -0,0 +1,45 @@
+#
+# Copyright 2016 National Renewable Energy Laboratory
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+FROM rafmudaf/openfast-ubuntu:dev
+
+# Move into the openfast directory and update
+WORKDIR /openfast
+RUN git fetch
+RUN git pull
+RUN git submodule update
+
+# Move into the "build" directory, remove the old reg tests, and compile
+WORKDIR /openfast/build
+RUN rm -rf reg_tests
+RUN cmake ..
+RUN make -j4 install
+
+# Run the tests
+
+# BeamDyn-specific tests
+RUN ctest -VV -j7 -R bd_
+RUN ctest -VV -R beamdyn_utest
+
+# OpenFAST linearization tests
+# Dont run these in parallel, copying the case files can fail in a race condition
+RUN ctest -VV -L linear
+
+# Subset of OpenFAST regression tests; do not run
+## - 9, 16 because they're very sensitive
+## - 19, 20 because theyre too long
+## - 17, 22, 23 becuase we dont know why they fail :(
+RUN ctest -VV -j8 -I 1,1,1,2,3,4,5,6,7,8,10,11,12,13,14,15,18,21,24,25

.github/actions/compile-and-test/action.yml

@@ -0,0 +1,10 @@
+name: 'Compile and test'
+description: 'Compile OpenFAST and run the tests'
+author: 'NREL'
+# inputs:
+#   build-type:
+#     description: 'Set the CMake build type: Release (-O3); RelWithDebInfo (-O2 -g); Debug (-g)'
+#     default: 'Release'
+runs:
+  using: 'docker'
+  image: 'Dockerfile'

.github/workflows/continuous-integration-workflow.yml

@@ -0,0 +1,22 @@
+
+name: OpenFAST Build and Test
+
+on: [push, pull_request]
+
+# runs-on: ${{ matrix.os }}
+# strategy:
+#   matrix:
+#     os: [macOS-10.14, ubuntu-18.04]
+# runs-on: docker://rafmudaf/openfast-ubuntu:alpha
+
+jobs:
+    build-and-test:
+        runs-on: ubuntu-latest
+        name: OpenFAST tests on Ubuntu
+        steps:
+        - name: Checkout
+          uses: actions/checkout@master
+          with:
+            submodule: recursive
+        - name: Build and test step
+          uses: ./.github/actions/compile-and-test

.gitignore

@@ -32,6 +32,7 @@ __pycache__/*
 
 # Build specific files
 build*/
+_build*/
 install/
 vs-build/
 
@@ -40,4 +41,5 @@ vs-build/
 .vscode
 .atom
 .fortls
-tags
+# backup files
+*.asv

.readthedocs.yml

@@ -0,0 +1,29 @@
+# .readthedocs.yml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+sphinx:
+  configuration: docs/conf.py
+
+formats:
+  - htmlzip
+  - pdf
+  # - epub
+
+python:
+  version: 3.7
+  install:
+    - requirements: docs/requirements.txt
+  system_packages: true
+
+# select the docker image to use: stable | latest
+build:
+  image: stable
+
+sphinx:
+  builder: html
+  configuration: docs/conf.py
+  fail_on_warning: true

.travis.yml

@@ -7,63 +7,55 @@
 
 language: c
 
-os:
-    - linux
-    - osx
-
-env:
-    - FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=ON
-    - FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=OFF
-    - FC=/usr/bin/gfortran; DOUBLE_PRECISION=ON
-    - FC=/usr/bin/gfortran; DOUBLE_PRECISION=OFF
-    # - FC=ifort; DOUBLE_PRECISION=ON; TRAVIS_BUILD_INTEL=YES
+matrix:
+  include:
+    - os: linux
+      dist: bionic
+      env: FC=/usr/bin/gfortran-7; DOUBLE_PRECISION=OFF
+    - os: linux
+      dist: bionic
+      env: FC=/usr/bin/gfortran-7; DOUBLE_PRECISION=ON; CPP_API=ON; CMAKE_FLAGS="-DBUILD_OPENFAST_CPP_API=$CPP_API"
+    - os: linux
+      dist: bionic
+      env: FC=/usr/bin/gfortran-7; DOUBLE_PRECISION=ON; CPP_API=ON; CMAKE_FLAGS="-DBUILD_OPENFAST_CPP_API=$CPP_API -DGENERATE_TYPES=ON"
+    - os: osx
+      osx_image: xcode11
+      env: FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=ON
+    - os: osx
+      osx_image: xcode11
+      env: FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=OFF
 
+# macos dependency install
+addons:
+  homebrew:
+    packages:
+      - gcc@7
+      - yaml-cpp
+      - hdf5
+      - open-mpi
+    update: true
+
 before_install:
-    # mac configuration
-    - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
-    - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew upgrade python; fi
-    - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install gcc@7; fi
-
     # linux configuration
-    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get update; fi
-    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get install gfortran; fi
-    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get install libblas-dev liblapack-dev; fi
-    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then pyenv shell 3.6.3; fi
-
-    # intel compiler
-    # this build requires setting an environment variable https://docs.travis-ci.com/user/environment-variables#defining-encrypted-variables-in-travisyml
-    # INTEL_SERIAL_NUMBER=XXXX-XXXXXXXX
-    - if [[ -n "${TRAVIS_BUILD_INTEL}" ]] ; then wget 'https://raw.githubusercontent.com/nemequ/icc-travis/master/install-icc.sh'; fi
-    - if [[ -n "${TRAVIS_BUILD_INTEL}" ]] ; then chmod 755 install-icc.sh; fi
-    - if [[ -n "${TRAVIS_BUILD_INTEL}" ]] ; then ./install-icc.sh --components ifort,icc,mkl; source ~/.bashrc; fi
+    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get install gfortran libblas-dev liblapack-dev; fi
+    - if [[ "$TRAVIS_OS_NAME" == "linux" && "$CPP_API" == "ON" ]]; then sudo apt-get install libopenmpi-dev libyaml-cpp-dev libhdf5-dev libxml2-dev; fi
+    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then pyenv shell 3.7.1; fi
 
     # common configuration
     - pip3 install numpy
 
 install:
     - mkdir build && cd build
-    - cmake .. -DBUILD_TESTING=ON -DDOUBLE_PRECISION=$DOUBLE_PRECISION -DBUILD_SHARED_LIBS=ON
-    - make -j 8 install
-
-matrix:
-  exclude:
-    - os: linux
-      env: FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=ON
-    - os: linux
-      env: FC=/usr/local/bin/gfortran-7; DOUBLE_PRECISION=OFF
-    - os: osx
-      env: FC=/usr/bin/gfortran; DOUBLE_PRECISION=ON
-    - os: osx
-      env: FC=/usr/bin/gfortran; DOUBLE_PRECISION=OFF
-    # - os: osx
-    #   env: FC=ifort; DOUBLE_PRECISION=ON; TRAVIS_BUILD_INTEL=YES
+    - cmake .. -DCMAKE_BUILD_TYPE=DEBUG -DBUILD_TESTING=ON -DBUILD_SHARED_LIBS=ON -DDOUBLE_PRECISION=$DOUBLE_PRECISION $CMAKE_FLAGS
+    - cat CMakeCache.txt
+    - make -j4 install
 
 script:
     # beamdyn unit tests
     - if [[ "$DOUBLE_PRECISION" == "ON" ]]; then ctest -VV -R beamdyn_utest; fi
 
     # beamdyn regression tests
-    - if [[ "$DOUBLE_PRECISION" == "ON" ]]; then ctest -VV -R bd_; fi
+    - if [[ "$DOUBLE_PRECISION" == "ON" ]]; then ctest -j4 -VV -R bd_; fi
 
     # subset of openfast regression tests
     # do not run
@@ -73,4 +65,3 @@ script:
     # CURRENTLY, TESTS FAIL WITH VERY MINOR DIFFERENCES
     # - ctest -VV -j 18 -I 1,1,1,2,5,6,8,9,10,11,12,13,14,18,19,22,23,24,25,26
     # - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then ctest -j 18 -I 1,1,1,2,5,6,8,9,10,11,12,13,14,18,19,22,23,24,25,26 ; fi
-

CMakeLists.txt

@@ -28,13 +28,25 @@ if (NOT CMAKE_BUILD_TYPE)
     "Choose the build type: Debug Release" FORCE)
 endif (NOT CMAKE_BUILD_TYPE)
 
+option(GENERATE_TYPES "Use the openfast-regsitry to autogenerate types modules" off)
 option(BUILD_SHARED_LIBS "Enable building shared libraries" off)
 option(DOUBLE_PRECISION "Treat REAL as double precision" on)
 option(USE_DLL_INTERFACE "Enable runtime loading of dynamic libraries" on)
 option(FPE_TRAP_ENABLED "Enable FPE trap in compiler options" off)
 option(ORCA_DLL_LOAD "Enable OrcaFlex Library Load" off)
 option(BUILD_OPENFAST_CPP_API "Enable building OpenFAST - C++ API" off)
 
+# Precompiler/preprocessor flag configuration
+# Do this before configuring modules so that the flags are included
+option(BUILD_TESTING "Build the testing tree." OFF)
+if(BUILD_TESTING)
+  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -DUNIT_TEST")
+endif()
+option(BUILD_OPENFAST_SIMULINK_API "Enable building OpenFAST for use with Simulink" off)
+if(BUILD_OPENFAST_SIMULINK_API)
+  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -DCOMPILE_SIMULINK")
+endif()
+
 # Setup Fortran Compiler options based on architecture/compiler
 set_fast_fortran()
 
@@ -60,18 +72,12 @@ else()
   find_package(LAPACK REQUIRED)
 endif()
 
-########################################################################
-# Test option configuration
-# Do this before configuring modules so that precompiler flags are included
-option(BUILD_TESTING "Build the testing tree." OFF)
-if(BUILD_TESTING)
-  set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -DUNIT_TEST")
-endif()
-
 ########################################################################
 # Build rules for OpenFAST Registry
 #
-add_subdirectory(modules/openfast-registry)
+if(GENERATE_TYPES)
+  add_subdirectory(modules/openfast-registry)
+endif()
 
 ########################################################################
 # OpenFAST modules
@@ -98,7 +104,7 @@ set(OPENFAST_MODULES
   icedyn
   icefloe
   map
-  )
+)
 
 set(OPENFAST_REGISTRY_INCLUDES "" CACHE INTERNAL "Registry includes paths")
 set_registry_includes("modules" ${OPENFAST_MODULES})

Makefile

@@ -1,8 +1,9 @@
 MAKE=make --no-print-directory
+CMAKE_ARGS= -DGENERATE_TYPES=ON -DCMAKE_BUILD_TYPE=Debug
 ifeq ($(OS),Windows_NT)
 	OS=Windows
 	suffix=-nmake
-	CMAKE_ARGS=-G"NMake Makefiles"
+	CMAKE_ARGS:=$(CMAKE_ARGS) -G"NMake Makefiles" 
 	MAKE=nmake
 	RMDIR=rmdir /S /Q
 	LIBEXT=.dll