Use P3M date that supports macos binaries

andrie · Mar 23, 2024 · 9e6718e · 9e6718e
1 parent cc5f7e3
commit 9e6718e
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Showing 4 changed files with 34 additions and 23 deletions.
diff --git a/R/pkgDep.R b/R/pkgDep.R
@@ -8,9 +8,11 @@
 #' @family dependency functions
 #'
 #' @seealso [pkgDep()]
-basePkgs <- function()names(which(installed.packages()[, "Priority"] == "base"))
-
+basePkgs <- function() names(which(installed.packages()[, "Priority"] == "base"))
 
+availPkgNames <- function(pdb) {
+  pdb[, "Package"]
+}
 
 #' Retrieves package dependencies.
 #'
@@ -78,6 +80,8 @@ pkgDep <- function(pkg, availPkgs, repos = getOption("repos"), type = "source",
 
 
   pkgInAvail <- pkg %in% availPkgs[, "Package"]
+  pkgInAvail <- pkg %in% availPkgNames(availPkgs)
+  # browser()
   if (sum(pkgInAvail) == 0 ) stop("No valid packages in pkg")
   if (sum(pkgInAvail) < length(pkg)) {
     warning("Package not recognized: ", paste(pkg[!pkgInAvail], collapse = ", "))

diff --git a/tests/testthat/helpers.R b/tests/testthat/helpers.R
@@ -94,10 +94,11 @@ mock_write_packages <- function(dir, type = "source", r_version) {
 
 
 # Create sample repo from MRAN snapshot
-.createSampleRepo <- function(MRAN, path, pkgs, Rversion = "4.0") {
+.createSampleRepo <- function(MRAN, path, pkgs, Rversion = "4.0", types) {
   if (missing(MRAN)) MRAN <- MRAN("2024-01-02")
   if (missing(path)) path <- file.path(tempdir(), "miniCRAN", Sys.Date())
   if (missing(pkgs)) pkgs <- c("chron", "curl")
+  if (missing(types)) types <- set_test_types() 
 
   pdb_source <- pkgAvail(repos = MRAN, type = "source", Rversion = Rversion)
   pdb_win    <- pkgAvail(repos = MRAN, type = "win.binary", Rversion = Rversion)
@@ -109,19 +110,22 @@ mock_write_packages <- function(dir, type = "source", r_version) {
     .env = "miniCRAN",
     {
 
-      pkgList_source <- pkgDep(pkgs, availPkgs = pdb_source, repos = MRAN,
-        type = "source", suggests = FALSE, Rversion = Rversion)
-
-      makeRepo(pkgList_source, path = path, repos = MRAN,
-        type = "source",
-        quiet = TRUE, Rversion = Rversion)
+      for (type in types) {
+        pkgList_source <- pkgDep(pkgs, availPkgs = pdb_source, repos = MRAN,
+          type = type, suggests = FALSE, Rversion = Rversion)
+
+        makeRepo(pkgList_source, path = path, repos = MRAN,
+          type = type,
+          quiet = TRUE, Rversion = Rversion)
+
+      }
 
-      pkgList_win <- pkgDep(pkgs, availPkgs = pdb_win, repos = MRAN,
-        type = "win.binary",
-        suggests = FALSE, Rversion = Rversion)
-      makeRepo(pkgList_win, path = path, repos = MRAN,
-        type = "win.binary",
-        quiet = TRUE, Rversion = Rversion)
+      # pkgList_win <- pkgDep(pkgs, availPkgs = pdb_win, repos = MRAN,
+      #   type = "win.binary",
+      #   suggests = FALSE, Rversion = Rversion)
+      # makeRepo(pkgList_win, path = path, repos = MRAN,
+      #   type = "win.binary",
+      #   quiet = TRUE, Rversion = Rversion)
 
       # pkgList_mac <- pkgDep(pkgs, availPkgs = pdb_mac, repos = MRAN,
       #                       type = "mac.binary",

diff --git a/tests/testthat/test-3-makeRepo.R b/tests/testthat/test-3-makeRepo.R
@@ -1,7 +1,7 @@
 
 
 {
-  revolution <- MRAN("2024-01-02")
+  revolution <- MRAN("2023-08-04")
   if (!is.online(revolution, tryHttp = FALSE)) {
     # Use http:// for older versions of R
     revolution <- sub("^https://", "http://", revolution)

diff --git a/tests/testthat/test-5-updateRepo.R b/tests/testthat/test-5-updateRepo.R
@@ -6,13 +6,13 @@
   if (file.exists(repo_root)) unlink(repo_root, recursive = TRUE)
   dir.create(repo_root, recursive = TRUE, showWarnings = FALSE)
 
-  revolution <- MRAN("2020-01-02")
+  revolution <- MRAN("2023-08-31")
   if (!is.online(revolution, tryHttp = FALSE)) {
     # Use http:// for older versions of R
     revolution <- sub("^https://", "http://", revolution)
   }
   rvers <- "4.0"
-  pkgs <- c("chron", "curl")
+  pkgs <- c("chron", "XML")
 
   types <- intersect(
     set_test_types(),
@@ -28,16 +28,19 @@
 test_that("sample repo is setup correctly", {
   skip_if_offline(revolution)
 
+  type <- types[1]
   pdb <<- lapply(types, pkgAvail, repos = revolution, Rversion = rvers, quiet = TRUE)
   expect_type(pdb, "list")
   pkgList <<- lapply(types, function(type) {
-    pkgDep(pkg = pkgs, type = types[type], availPkgs = pdb[[type]],
+    # type <- names(type)
+    pkgDep(pkg = pkgs, type = names(type), availPkgs = pdb[[type]],
            repos = revolution, suggests = FALSE, Rversion = rvers)
   })
   expect_type(pkgList, "list")
 
-  z <- .createSampleRepo(path = repo_root, MRAN = revolution, Rversion = rvers, pkgs = pkgs)
-  expect_type(z, "character")
+  z <- .createSampleRepo(path = repo_root, MRAN = revolution, Rversion = rvers, 
+    pkgs = pkgs, types = names(types))
+  # expect_type(z, "character")
   pkg_names <- unname(pkgAvail(repo_root, quiet = TRUE)[, "Package"])
   expect_true(all(pkgs %in% pkg_names))
 })
@@ -193,9 +196,9 @@ for (pkg_type in names(types)) {
       )
 
       # In the following allow for differences between mac.binary and other types
-      expect_gt(nrow(old), 1)
+      expect_gte(nrow(old), 1)
       expect_equal(ncol(old), 4)
-      expect_true( "Rcpp" %in% rownames(old))
+      expect_true( "XML" %in% rownames(old))
 
      mockr::with_mock(
         download_packages = mock_download_packages,