Check for missing fovs after run is complete #582
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body: '{"body":"- Ensure runs below fovs\\\\_per\\\\_num threshold get skipped during Rosetta t… @alex-l-kong ([#406](https://github.com/angelolab/toffy/pull/406))\\n- Skip watcher callbacks for FOVs that already have data generated @alex-l-kong ([#394](https://github.com/angelolab/toffy/pull/394))\\n- Ensure incompletely extracted bin files get re-extracted @alex-l-kong ([#392](https://github.com/angelolab/toffy/pull/392))\\n- Turn off `combined.csv` file warnings for intermediate callbacks in watcher @alex-l-kong ([#393](https://github.com/angelolab/toffy/pull/393))\\n- Make sure watcher logging actually writes to file on CACs @alex-l-kong ([#390](https://github.com/angelolab/toffy/pull/390))\\n- Turn on y ticks for QC plots @alex-l-kong ([#386](https://github.com/angelolab/toffy/pull/386))\\n- Norm workflow @alex-l-kong ([#361](https://github.com/angelolab/toffy/pull/361))\\n- Cap normalization at 10X upper bound, and 1X lower bound @alex-l-kong ([#352](https://github.com/angelolab/toffy/pull/352))\\n- Add functionality to catch file renaming to watcher @alex-l-kong ([#359](https://github.com/angelolab/toffy/pull/359))\\n- Remove warning for .def.hist and .pro.hist files @alex-l-kong ([#381](https://github.com/angelolab/toffy/pull/381))\\n- Allow for image specified for flatfield correction to be empty @cliu72 ([#383](https://github.com/angelolab/toffy/pull/383))\\n- Add a scale factor for `image_stitching.stitch_images` for Photoshop compatibility @alex-l-kong ([#374](https://github.com/angelolab/toffy/pull/374))\\n\\n## 🚀 Features\\n\\n- QC Metrics - Save Longitudinal Transformed Metrics @srivarra ([#408](https://github.com/angelolab/toffy/pull/408))\\n- Ensure watcher can wait on run folder to appear @alex-l-kong ([#401](https://github.com/angelolab/toffy/pull/401))\\n- QC for TMAs and Control Samples @srivarra ([#358](https://
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