tweaks

angelolab · Aug 16, 2023 · 53934f0 · 53934f0
1 parent 2f7f72e
commit 53934f0
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/toffy/image_stitching.py b/src/toffy/image_stitching.py
@@ -331,7 +331,7 @@ def fix_image_resolutions(resolution_data, extraction_dir):
 
  # loop through problematic fovs
  for fov in res_change.fov:
- fov_res = res_change[res_change.fov == fov]["pixels / 400 microns"]
+ fov_res = res_change[res_change.fov == fov]["pixels / 400 microns"].values
  scale = correct_res / fov_res
 
  tiff_data = load_utils.load_imgs_from_tree(extraction_dir, fovs=[fov])

diff --git a/templates/3f_check_resolutions.ipynb b/templates/3f_check_resolutions.ipynb
@@ -18,7 +18,7 @@
  "source": [
  "import os\n",
  "from toffy.json_utils import check_fov_resolutions\n",
- "from image_stitching import fix_image_resolutions"
+ "from toffy.image_stitching import fix_image_resolutions"
  ]
  },
  {
@@ -89,7 +89,7 @@
  "outputs": [],
  "source": [
  "# change image size for any FOVs with inconsistent resolutions\n",
- "fix_image_resolutions(resolution_data)"
+ "fix_image_resolutions(resolution_data, extraction_dir)"
  ]
  }
  ],