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Remove warning that autogain is not compatible
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alex-l-kong committed Dec 13, 2023
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4 changes: 1 addition & 3 deletions templates/4b_normalize_image_data.ipynb
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"source": [
"# Image Normalization\n",
"\n",
"## Warning: this notebook is currently not compatible with the MIBIcontrol 1.8 update. An updated workflow is in the works.\n",
"\n",
"This notebook will walk you through the process of normalizing your image data.\n",
"\n",
"Changes in detector sensitivity over a run can result in different image intensities, even when there are no actual difference in biological signal. To correct for this, we use the median pulse height (MPH) to measure detector sensitivity. We then combine this estimate of sensitivity with an instrument tuning curve to determine the normalization coefficient for each FOV.\n",
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.6"
"version": "3.9.16"
},
"vscode": {
"interpreter": {
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