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start_watcher won't process "missed" FOVs if MIBI run interrupted #314

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alex-l-kong opened this issue Feb 1, 2023 · 1 comment
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start_watcher won't process "missed" FOVs if MIBI run interrupted #314

alex-l-kong opened this issue Feb 1, 2023 · 1 comment
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@alex-l-kong
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Describe the bug

Taken from #306:

When/if a run is interrupted halfway on the MIBI scope, start_watcher function will keep watching for new FOVs without generating any plots as a new run will be initiated for the remaining FOVs while the original run json file will never be completed.

Expected behavior

All of the FOVs should be processed even if the MIBI run got interrupted midway.

To Reproduce

Interrupt the MIBI run.
@alex-l-kong alex-l-kong added the bug Something isn't working label Feb 1, 2023
@ngreenwald
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The user will need to restart the watcher when the run is restarted, since it will have a new run name

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@ngreenwald @alex-l-kong