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Decoupler tutorial #1

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1,176 changes: 1,176 additions & 0 deletions docs/notebooks/Functional_analysis_with_decoupler.ipynb

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10,416 changes: 10,416 additions & 0 deletions docs/notebooks/data/T_cell_DEA_pyDeseq2_results_df.csv

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name: Functional analysis with decoupler
description: |
This notebook showcases decoupler for pathway and TF enrichment on ~5k
Blood myeloid cells from healthy and COVID-19 infected patients.
link: https://github.com/scverse/scverse-tutorials/tree/main/docs/notebooks/Functional_analysis_with_decoupler.ipynb
image: icon.png
primary_category: scRNA-seq
tags:
- functional analysis
- transcription factor activity inference
- pathway activity inference
packages:
- decoupler
- scanpy
authors:
- PauBadiaM