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GH-41834: [R] Better error handling in dplyr code #41576

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merged 12 commits into from
May 29, 2024

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@nealrichardson nealrichardson commented May 7, 2024

I started out trying to make it so that arrow_eval() could just raise its errors, rather than catch them and have every caller inspect and re-raise. I ended up pulling on this further and ended up refactoring most of the error handling in the dplyr code paths. Summary of changes, from the bottom up:

  • We have two wrappers that raise classed errors: arrow_not_supported() (which previously existed but just called stop()) and validation_error(). They raise arrow_not_supported and validation_error, respectively. Function bindings now raise one or the other, never just stop/abort.
  • arrow_eval() modifies the errors raised by function bindings, inserting the expression as the call attribute of the error, which lets rlang handle the printing cleaner, and catching any non-classed errors and re-raising them as arrow_not_supported or validation_error, as appropriate.
  • New try_arrow_dplyr() wrapper around everything inside (most*) dplyr verb implementations, which only calls abandon_ship() on arrow_not_supported errors, and lets all other errors just raise. For datasets, it just adds an additional note to the error message advising you that you can call collect(). So errors generally bubble up, and each of these wrappers adds some context to the message.
  • I also removed the developer vignette writing_bindings.Rmd, per this comment.

The ultimate results of all of this:

  • We now don't tell people to collect() (or, if on in-memory data, just do it) in cases where it would also fail in regular dplyr because the input is invalid.
  • Nicer error printing across the board, using rlang/cli for formatting, and cleaner calls and tracebacks. No more Error: Error : messages.
  • Adds the ability to provide helpful suggestions in error messages in bindings, for cases where there is an alternative available other than just collect(). In fact, if there are suggestions with the ">" (arrow) bullet, we don't just add "Call collect()", we say "Or, call collect()".
  • For us, it should be easier to work with arrow_eval() and the dplyr verbs in general. There's less bookkeeping you have to do to catch and rethrow errors, and it's consistent across the various parts of the evaluation (i.e. the same thing works inside the dplyr verbs as in the bindings).

Some concrete examples:

  1. Invalid input in a binding. Retry with dplyr won't help, so don't automatically do it (if Table) or suggest it (if Dataset).
# Before: 
mtcars |> 
  arrow_table() |> 
  transmute(case_when())
#> Warning: Expression case_when() not supported in Arrow; pulling data into R
#> Error:
#> ℹ In argument: `case_when()`.
#> Caused by error in `case_when()`:
#> ! At least one condition must be supplied.

# After:
mtcars |>
  arrow_table() |>
  transmute(case_when())
#> Error in `case_when()`:
#> ! No cases provided
  1. Dealing with unsupported features outside of the bindings. This example is something that is checked in summarize() but not caught inside arrow_eval() because it's not about the expressions.
# Before:
mtcars |> 
  InMemoryDataset$create() |> 
  group_by(cyl) |> 
  summarize(mean(hp), .groups = "rowwise")
#> Error: Error : .groups = "rowwise" not supported in Arrow
#> Call collect() first to pull data into R.

# After:
mtcars |>
  InMemoryDataset$create() |> 
  group_by(cyl) |> 
  summarize(mean(hp), .groups = "rowwise")
#> Error in `summarise.arrow_dplyr_query()`:
#> ! .groups = "rowwise" not supported in Arrow
#> → Call collect() first to pull data into R.
  1. When there are ways to solve the issue other than calling collect(), we give the user options:
# After:
mtcars |>
  InMemoryDataset$create() |> 
  transmute(date = as.Date(mpg, tryFormats = c("%Y-%m-%d", "%Y/%m/%d")))
#> Error in `as.Date()`:
#> ! `as.Date()` with multiple `tryFormats` not supported in Arrow
#> → Consider using the lubridate specialised parsing functions `ymd()`, `ymd()`, etc.
#> → Or, call collect() first to pull data into R.

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@nealrichardson nealrichardson marked this pull request as ready for review May 26, 2024 19:34
@nealrichardson nealrichardson changed the title WIP [R] Better error handling in dplyr code GH-41834: [R] Better error handling in dplyr code May 26, 2024
@nealrichardson nealrichardson requested a review from jonkeane May 26, 2024 19:59
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⚠️ GitHub issue #41834 has been automatically assigned in GitHub to PR creator.

abort("`...` argument to `across()` is deprecated in dplyr and not supported in Arrow")
arrow_not_supported(
"`...` argument to `across()` is deprecated in dplyr and",
body = c(">" = "Convert your call into a function or formula including the arguments"),
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TIL about this making arrows!

@github-actions github-actions bot added awaiting changes Awaiting changes and removed awaiting review Awaiting review labels May 27, 2024
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Thanks for this! I'm really excited to see more helpful warnings.

I went through some of the code pretty thoroughly, but mostly skimmed the dplyr-{verb}.R files since those are all(?) indentation changes, yeah?

@github-actions github-actions bot added awaiting merge Awaiting merge and removed awaiting changes Awaiting changes labels May 27, 2024
names(sorts)[i] <- format_expr(exprs[[i]])
if (inherits(sorts[[i]], "try-error")) {
msg <- paste("Expression", names(sorts)[i], "not supported in Arrow")
return(abandon_ship(call, .data, msg))
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Here's an example of "not just an indentation change": in the new code, we don't have to evaluate, catch the error, and re-raise in abandon_ship, we just let arrow_eval() raise, and try_arrow_dplyr() handles the abandon_ship.

!is.null(results[[new_var]])) {
# We need some wrapping to handle literal values
if (length(results[[new_var]]) != 1) {
arrow_not_supported("Recycling values of length != 1", call = exprs[[i]])
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Here's another not-just-indentation change: for validations/errors outside of arrow_eval, we just raise arrow_not_supported or validation_error like in the function bindings.

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I went through some of the code pretty thoroughly, but mostly skimmed the dplyr-{verb}.R files since those are all(?) indentation changes, yeah?

Mostly. I just went back and commented on the PR in a couple places that show some of the non-indentation changes.

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I should probably go and add some sentences to the writing_bindings.Rmd vignette, at least to x-ref to the man page I added for the new errors.

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I should probably go and add some sentences to the writing_bindings.Rmd vignette, at least to x-ref to the man page I added for the new errors.

Do we definitely still want/need that article? I am a big +1 to removing redundant docs/code, and given that it's buried in the developer docs and it's not likely there'll be a ton of new Acero functions, we could, like, just delete it?

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Always a fan of UX changes like this, and I love the usage of to suggest a concrete action. Out of curiosity, is this something we're emulating from somewhere else or something you came up with on this PR @nealrichardson?

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Do we definitely still want/need that article? I am a big +1 to removing redundant docs/code, and given that it's buried in the developer docs and it's not likely there'll be a ton of new Acero functions, we could, like, just delete it?

I'm cool with deleting it. You're right that it's from another era in the package's development. And if someone is going to add more bindings, there's hundreds of examples to copy now.

Always a fan of UX changes like this, and I love the usage of to suggest a concrete action. Out of curiosity, is this something we're emulating from somewhere else or something you came up with on this PR @nealrichardson?

I guess I came up with it. Looking at the options in cli (https://cli.r-lib.org/reference/cli_bullets.html), I wanted to reserve the i information ones for clarifying details, the others didn't seem appropriate, and, well, arrow just seemed like a logical choice for this package :)

@nealrichardson nealrichardson merged commit 774ee0f into apache:main May 29, 2024
11 of 12 checks passed
@nealrichardson nealrichardson deleted the better-errors branch May 29, 2024 15:37
nealrichardson added a commit that referenced this pull request May 30, 2024
### Rationale for this change

Missed this in #41576

### Are these changes tested?

We should make sure.

### Are there any user-facing changes?

No.
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After merging your PR, Conbench analyzed the 7 benchmarking runs that have been run so far on merge-commit 774ee0f.

There were 8 benchmark results indicating a performance regression:

The full Conbench report has more details. It also includes information about 9 possible false positives for unstable benchmarks that are known to sometimes produce them.

jonkeane added a commit that referenced this pull request Jul 21, 2024
Necessary for a clean check. These were inadvertently taken out in #41576 and don't actually change any code, just appeases the static checker that CRAN runs.

Authored-by: Jonathan Keane <jkeane@gmail.com>
Signed-off-by: Jonathan Keane <jkeane@gmail.com>
jonkeane added a commit that referenced this pull request Jul 21, 2024
Necessary for a clean check. These were inadvertently taken out in #41576 and don't actually change any code, just appeases the static checker that CRAN runs.

Authored-by: Jonathan Keane <jkeane@gmail.com>
Signed-off-by: Jonathan Keane <jkeane@gmail.com>
nealrichardson added a commit that referenced this pull request Sep 1, 2024
### Rationale for this change

The writing-bindings vignette was removed in
#41576 (comment). It
turns out there were more references to it throughout the docs that I
failed to remove

### What changes are included in this PR?

Deleting x-refs that don't exist anymore.

### Are these changes tested?

Not really

### Are there any user-facing changes?

The docs won't point you at links that 404.
* GitHub Issue: #43665
mapleFU pushed a commit to mapleFU/arrow that referenced this pull request Sep 3, 2024
)

### Rationale for this change

The writing-bindings vignette was removed in
apache#41576 (comment). It
turns out there were more references to it throughout the docs that I
failed to remove

### What changes are included in this PR?

Deleting x-refs that don't exist anymore.

### Are these changes tested?

Not really

### Are there any user-facing changes?

The docs won't point you at links that 404.
* GitHub Issue: apache#43665
zanmato1984 pushed a commit to zanmato1984/arrow that referenced this pull request Sep 6, 2024
)

### Rationale for this change

The writing-bindings vignette was removed in
apache#41576 (comment). It
turns out there were more references to it throughout the docs that I
failed to remove

### What changes are included in this PR?

Deleting x-refs that don't exist anymore.

### Are these changes tested?

Not really

### Are there any user-facing changes?

The docs won't point you at links that 404.
* GitHub Issue: apache#43665
khwilson pushed a commit to khwilson/arrow that referenced this pull request Sep 14, 2024
)

### Rationale for this change

The writing-bindings vignette was removed in
apache#41576 (comment). It
turns out there were more references to it throughout the docs that I
failed to remove

### What changes are included in this PR?

Deleting x-refs that don't exist anymore.

### Are these changes tested?

Not really

### Are there any user-facing changes?

The docs won't point you at links that 404.
* GitHub Issue: apache#43665
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3 participants