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HBASE-26187 Write straight into the store directory when Splitting an… #3574

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merged 7 commits into from
Aug 17, 2021

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…d Merging

Change-Id: I5d0bbd99d27a6b3ecdd0a069dc8741239b32edfa

…d Merging

Change-Id: I5d0bbd99d27a6b3ecdd0a069dc8741239b32edfa
Comment on lines 587 to 618
void cleanupSplitsDir() throws IOException {
deleteDir(getSplitsDir());
}

/**
* Clean up any split detritus that may have been left around from previous
* split attempts.
* Call this method on initial region deploy.
* @throws IOException
*/
void cleanupAnySplitDetritus() throws IOException {
Path splitdir = this.getSplitsDir();
if (!fs.exists(splitdir)) return;
// Look at the splitdir. It could have the encoded names of the daughter
// regions we tried to make. See if the daughter regions actually got made
// out under the tabledir. If here under splitdir still, then the split did
// not complete. Try and do cleanup. This code WILL NOT catch the case
// where we successfully created daughter a but regionserver crashed during
// the creation of region b. In this case, there'll be an orphan daughter
// dir in the filesystem. TOOD: Fix.
FileStatus[] daughters = CommonFSUtils.listStatus(fs, splitdir, new FSUtils.DirFilter(fs));
if (daughters != null) {
for (FileStatus daughter: daughters) {
Path daughterDir = new Path(getTableDir(), daughter.getPath().getName());
if (fs.exists(daughterDir) && !deleteDir(daughterDir)) {
throw new IOException("Failed delete of " + daughterDir);
}
}
}
cleanupSplitsDir();
LOG.info("Cleaned up old failed split transaction detritus: " + splitdir);
}
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Since we won't be using temp dirs anymore, these methods would have no use. Any potential failed split/merge dir would be cleaned by CatalogJanitor, once it finds no related entry in meta for these regions.

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@@ -572,51 +572,15 @@ public void removeStoreFiles(String familyName, Collection<HStoreFile> storeFile
// ===========================================================================
// Splits Helpers
// ===========================================================================
/** @return {@link Path} to the temp directory used during split operations */
/** @return {@link Path} to the table directory for split daughters */
Path getSplitsDir() {
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Do we still need this method?

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Not really, let me remove it.

if (!deleteDir(splitdir)) {
throw new IOException("Failed deletion of " + splitdir + " before creating them again.");
}
}
// splitDir doesn't exists now. No need to do an exists() call for it.
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This comment is incorrect now?

@@ -380,4 +382,190 @@ public void testTempAndCommit() throws IOException {

fs.delete(rootDir, true);
}

@Test
public void testSplitStoreDir() throws Exception {
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Better place the below methods to a different test class? And is it possible to only start mini cluster once? Now every test method needs to start and then stop the mini cluster, which is time consuming...

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Ok, let me move these to a separate class and do the mini cluster init only once.

// splitDir doesn't exists now. No need to do an exists() call for it.
if (!createDir(splitdir)) {
throw new IOException("Failed create of " + splitdir);
if (!fs.exists(splitdir)) {
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So the split directory is now the table directory, why we still need to check existence here? And IMO here we should not use 'splitDir' and 'mergeDir' in code any more, as now there are only region directories...

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Removing the check, not needed now that we are creating the resulting split region on the table dir itself.

Wellington Chevreuil added 2 commits August 11, 2021 15:41
Change-Id: I8e5a207000513dd3ecab5ca807e6b85c2e39aba6
Change-Id: Iaf396b20cf742485a5bb705365712a0cdd94a915
@wchevreuil wchevreuil requested a review from Apache9 August 12, 2021 09:11
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wchevreuil commented Aug 12, 2021

One thought I had now is that we probably need to back off CatalogJanitor from running whilst a split/merge is going on. As we are creating the dirs under table directory, I guess there's a risk CatalogJanitor wipe those dirs off before the proc reaches the point to add the region in meta. Let me check on this further.

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Apache9 commented Aug 12, 2021

One thought I had now is that we probably need to back off CatalogJanitor from running whilst a split/merge is going on. As we are creating the dirs under table directory, I guess there's a risk CatalogJanitor wipe those dirs off before the proc reaches the point to add the region in meta. Let me check on this further.

Ah, yes, I also noticed this when review this PR as you mentioned CatalogJanitor. But even we do not write directly to region dir, there could still be an interval between we move the region into place and add it in meta table? I guess we should have already found the way to deal with this, otherwise it could cause data loss...

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Apache9 commented Aug 12, 2021

After reviewing the code for CatalogJanitor, I do not think it will clean the partial regions on FileSystem, as I haven't seen any related code about scanning the table directory on FileSystem, it just scans the meta table.

So in general, I think we should change the rollback code in SplitTableRegionProcedure and MergeTableRegionsProcedure, to remove the paritial regions when rolling back.

And I think we should also have a tool in HBCK2 to remove the partial regions.

Thanks.

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Change-Id: I044bab8c9b1a4c8595a0ce6e01d73d93aa04c5bc
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After reviewing the code for CatalogJanitor, I do not think it will clean the partial regions on FileSystem, as I haven't seen any related code about scanning the table directory on FileSystem, it just scans the meta table.

So in general, I think we should change the rollback code in SplitTableRegionProcedure and MergeTableRegionsProcedure, to remove the paritial regions when rolling back.

And I think we should also have a tool in HBCK2 to remove the partial regions.

Thanks.

Yep, had just found the same. Had added the cleanup logic on the rollback. I will work on hbck2 on a separate issue.

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-0 ⚠️ yetus 0m 2s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 4m 23s master passed
+1 💚 compile 1m 3s master passed
+1 💚 shadedjars 9m 9s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 39s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 6s the patch passed
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_ Other Tests _
-1 ❌ unit 210m 41s hbase-server in the patch failed.
243m 51s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/3/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #3574
Optional Tests javac javadoc unit shadedjars compile
uname Linux abe9229dd2e4 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
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Default Java AdoptOpenJDK-1.8.0_282-b08
unit https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/3/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-hbase-server.txt
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Max. process+thread count 2806 (vs. ulimit of 30000)
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Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/3/console
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Change-Id: I6ff9b9526c08c49d361460989aa0b592a2ca2abf
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 2m 21s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+1 💚 mvninstall 4m 10s master passed
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+1 💚 spotbugs 2m 10s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 7s the patch passed
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+1 💚 checkstyle 1m 14s hbase-server: The patch generated 0 new + 190 unchanged - 4 fixed = 190 total (was 194)
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_ Other Tests _
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54m 50s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #3574
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti checkstyle compile
uname Linux ee4ad4a7f6cd 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 11222fc
Default Java AdoptOpenJDK-1.8.0_282-b08
Max. process+thread count 85 (vs. ulimit of 30000)
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Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/console
versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 3s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 5m 7s master passed
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+1 💚 javadoc 0m 43s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 48s the patch passed
+1 💚 compile 1m 19s the patch passed
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+1 💚 shadedjars 8m 58s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 42s the patch passed
_ Other Tests _
+1 💚 unit 202m 2s hbase-server in the patch passed.
237m 6s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR #3574
Optional Tests javac javadoc unit shadedjars compile
uname Linux 6e0a68a86607 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 11222fc
Default Java AdoptOpenJDK-11.0.10+9
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/testReport/
Max. process+thread count 2644 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/console
versions git=2.17.1 maven=3.6.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 59s Docker mode activated.
-0 ⚠️ yetus 0m 3s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 4m 8s master passed
+1 💚 compile 1m 3s master passed
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+1 💚 javadoc 0m 37s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 8s the patch passed
+1 💚 compile 1m 4s the patch passed
+1 💚 javac 1m 4s the patch passed
+1 💚 shadedjars 9m 5s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 36s the patch passed
_ Other Tests _
+1 💚 unit 220m 11s hbase-server in the patch passed.
253m 27s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #3574
Optional Tests javac javadoc unit shadedjars compile
uname Linux 27ccc1febfd9 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 11222fc
Default Java AdoptOpenJDK-1.8.0_282-b08
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/testReport/
Max. process+thread count 2555 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/4/console
versions git=2.17.1 maven=3.6.3
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No big concerns from me. Will give a +1 after the final small nits are resolved.

Change-Id: Ifed765ffb52dde013977efa1315d29f40fef7d8f
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Overall LGTM.

+1.

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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 3s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
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_ master Compile Tests _
+1 💚 mvninstall 4m 6s master passed
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_ Patch Compile Tests _
+1 💚 mvninstall 4m 6s the patch passed
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_ Other Tests _
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51m 43s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/5/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #3574
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti checkstyle compile
uname Linux f5744711e64e 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 44d5624
Default Java AdoptOpenJDK-1.8.0_282-b08
Max. process+thread count 85 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/5/console
versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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Change-Id: If229fc474e22852e106568dc6d978f428cfd9884
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 3s Docker mode activated.
-0 ⚠️ yetus 0m 2s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 4m 9s master passed
+1 💚 compile 1m 4s master passed
+1 💚 shadedjars 9m 3s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 37s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 6s the patch passed
+1 💚 compile 1m 4s the patch passed
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+1 💚 javadoc 0m 38s the patch passed
_ Other Tests _
+1 💚 unit 210m 43s hbase-server in the patch passed.
243m 27s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/5/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #3574
Optional Tests javac javadoc unit shadedjars compile
uname Linux caf96e48cf4a 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 44d5624
Default Java AdoptOpenJDK-1.8.0_282-b08
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/5/testReport/
Max. process+thread count 2570 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/5/console
versions git=2.17.1 maven=3.6.3
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 3s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
_ master Compile Tests _
+1 💚 mvninstall 4m 5s master passed
+1 💚 compile 3m 23s master passed
+1 💚 checkstyle 1m 12s master passed
+1 💚 spotbugs 2m 10s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 4s the patch passed
+1 💚 compile 3m 25s the patch passed
+1 💚 javac 3m 25s the patch passed
+1 💚 checkstyle 1m 14s hbase-server: The patch generated 0 new + 190 unchanged - 4 fixed = 190 total (was 194)
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 hadoopcheck 20m 9s Patch does not cause any errors with Hadoop 3.1.2 3.2.1 3.3.0.
+1 💚 spotbugs 2m 38s the patch passed
_ Other Tests _
+1 💚 asflicense 0m 12s The patch does not generate ASF License warnings.
52m 49s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/6/artifact/yetus-general-check/output/Dockerfile
GITHUB PR #3574
Optional Tests dupname asflicense javac spotbugs hadoopcheck hbaseanti checkstyle compile
uname Linux a126260ee7c9 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 44d5624
Default Java AdoptOpenJDK-1.8.0_282-b08
Max. process+thread count 85 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/6/console
versions git=2.17.1 maven=3.6.3 spotbugs=4.2.2
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 3s Docker mode activated.
-0 ⚠️ yetus 0m 4s Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚 mvninstall 4m 4s master passed
+1 💚 compile 1m 4s master passed
+1 💚 shadedjars 9m 1s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 37s master passed
_ Patch Compile Tests _
+1 💚 mvninstall 4m 7s the patch passed
+1 💚 compile 1m 4s the patch passed
+1 💚 javac 1m 4s the patch passed
+1 💚 shadedjars 9m 3s patch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 37s the patch passed
_ Other Tests _
+1 💚 unit 208m 14s hbase-server in the patch passed.
240m 53s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/6/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR #3574
Optional Tests javac javadoc unit shadedjars compile
uname Linux 9cc07f8e6b64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:21:19 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality dev-support/hbase-personality.sh
git revision master / 44d5624
Default Java AdoptOpenJDK-1.8.0_282-b08
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/6/testReport/
Max. process+thread count 2512 (vs. ulimit of 30000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-3574/6/console
versions git=2.17.1 maven=3.6.3
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@wchevreuil wchevreuil merged commit 721cb96 into apache:master Aug 17, 2021
wchevreuil added a commit to wchevreuil/hbase that referenced this pull request Aug 17, 2021
apache#3574)

Change-Id: I574d110d6885de5eb3c8141eb6d28bb295299b3a
Signed-off-by: Duo Zhang <zhangduo@apache.org>
wchevreuil added a commit that referenced this pull request Aug 18, 2021
vinayakphegde pushed a commit to vinayakphegde/hbase that referenced this pull request Apr 4, 2024
apache#3574)

Signed-off-by: Duo Zhang <zhangduo@apache.org>

Change-Id: I738cfe24ac599a01c76a8c2ee29bb94bd021151d
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