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feat(c++,spark): support json payload file format #518
feat(c++,spark): support json payload file format #518
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@amygbAI I see that all the tests are passed except Neo4j example and the error is about missing test data:
I mean, that code is compiled and there is no problem you mentioned in #488 |
thanks at @SemyonSinchenko .. pulled and removed the local reference .. is there some way to run all of these builds before opening a PR ? as per directions on the thread and README's i built all the directories where i had made changes and tested .. |
maven-projects/spark/datasources-32/src/main/scala/org/apache/spark/sql/graphar/GarTable.scala
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Hi, @amygbAI, The C++ library you can reference to the https://github.com/apache/incubator-graphar/tree/main/cpp#building to check the test, and for format error, remember that we use the clang-format-8 for format check. |
resolved all comments, formatted, linted and built using instructions .. also removed the "build" folder from cpp since it wasn't in the repository ( much like target folders ) |
May we add also a test for graphar spark+json? |
please send me an example for spark + csv and i ll refactor it
…On Wed, Jun 12, 2024 at 2:51 PM Semyon ***@***.***> wrote:
May we add also a test for graphar spark+json?
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You can refer to the existed test case an just add a test with updated json test data like:
json test can be: test("read vertex chunks") {
// construct the vertex information
val prefix = testData + "/ldbc_sample/json/"
val vertex_yaml = prefix + "Person.vertex.yml"
val vertex_info = VertexInfo.loadVertexInfo(vertex_yaml, spark)
// construct the vertex reader
val reader = new VertexReader(prefix, vertex_info, spark)
// test reading the number of vertices
assert(reader.readVerticesNumber() == 903)
val property_group = vertex_info.getPropertyGroup("gender")
// test reading a single property chunk
val single_chunk_df = reader.readVertexPropertyChunk(property_group, 0)
assert(single_chunk_df.columns.length == 4)
assert(single_chunk_df.count() == 100)
val cond = "gender = 'female'"
var df_pd = single_chunk_df.select("firstName", "gender").filter(cond)
json test can be: def test_vertex_reader_with_json(spark):
initialize(spark)
vertex_info = VertexInfo.load_vertex_info(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/")
.joinpath("Person.vertex.yml")
.absolute()
.__str__()
)
vertex_reader = VertexReader.from_python(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/").absolute().__str__(),
vertex_info,
)
assert VertexReader.from_scala(vertex_reader.to_scala()) is not None
assert vertex_reader.read_vertices_number() > 0
assert (
vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("name")
).count()
> 0
)
assert (
vertex_reader.read_vertex_property_chunk(
vertex_info.get_property_groups()[0], 0
).count()
> 0
)
assert (
vertex_reader.read_all_vertex_property_groups().count()
>= vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("age")
).count()
)
assert (
vertex_reader.read_multiple_vertex_property_groups(
[vertex_info.get_property_group("name")]
).count()
> 0
) |
alritey folks .. done
On Wed, Jun 12, 2024 at 4:39 PM Weibin Zeng ***@***.***>
wrote:
… please send me an example for spark + csv and i ll refactor it
… <#m_-7895995846438427138_>
On Wed, Jun 12, 2024 at 2:51 PM Semyon *@*.*> wrote: May we add also a
test for graphar spark+json? — Reply to this email directly, view it on
GitHub <#518 (comment)
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You can refer to the existed test case an just add a test with updated
json test data like:
- Spark
https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/maven-projects/spark/graphar/src/test/scala/org/apache/graphar/TestReader.scala#L99-L117
json test can be:
test("read vertex chunks") {// construct the vertex information
val prefix = testData + "/ldbc_sample/json/"
val vertex_yaml = prefix + "Person.vertex.yml"
val vertex_info = VertexInfo.loadVertexInfo(vertex_yaml, spark)
// construct the vertex reader
val reader = new VertexReader(prefix, vertex_info, spark)
// test reading the number of vertices
assert(reader.readVerticesNumber() == 903)
val property_group = vertex_info.getPropertyGroup("gender")
// test reading a single property chunk
val single_chunk_df = reader.readVertexPropertyChunk(property_group, 0)
assert(single_chunk_df.columns.length == 4)
assert(single_chunk_df.count() == 100)
val cond = "gender = 'female'"
var df_pd = single_chunk_df.select("firstName", "gender").filter(cond)
- pyspark
https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/pyspark/tests/test_reader.py#L29-L67
json test can be:
def test_vertex_reader_with_json(spark):
initialize(spark)
vertex_info = VertexInfo.load_vertex_info(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/")
.joinpath("Person.vertex.yml")
.absolute()
.__str__()
)
vertex_reader = VertexReader.from_python(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/").absolute().__str__(),
vertex_info,
)
assert VertexReader.from_scala(vertex_reader.to_scala()) is not None
assert vertex_reader.read_vertices_number() > 0
assert (
vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("name")
).count()
> 0
)
assert (
vertex_reader.read_vertex_property_chunk(
vertex_info.get_property_groups()[0], 0
).count()
> 0
)
assert (
vertex_reader.read_all_vertex_property_groups().count()
>= vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("age")
).count()
)
assert (
vertex_reader.read_multiple_vertex_property_groups(
[vertex_info.get_property_group("name")]
).count()
> 0
)
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Hi, @amygbAI Can you add me to your graphar fork repo's collaborator? I can help you fix the format and test. |
done ..kindly let me know what changes u make .. i am compiling a document
of all the communication we have had so that it becomes a good
starting point for noobs like me
On Mon, Jun 17, 2024 at 8:43 AM Weibin Zeng ***@***.***>
wrote:
… alritey folks .. done On Wed, Jun 12, 2024 at 4:39 PM Weibin Zeng *@*.
*> wrote: … <#m_-8019765962861073975_> please send me an example for spark
+ csv and i ll refactor it … <#m_-7895995846438427138_> On Wed, Jun 12,
2024 at 2:51 PM Semyon @.> wrote: May we add also a test for graphar
spark+json? — Reply to this email directly, view it on GitHub <#518
<#518> (comment) <#518
(comment)
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. You are receiving this because you were mentioned.Message ID: @.> You can
refer to the existed test case an just add a test with updated json test
data like: - Spark
https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/maven-projects/spark/graphar/src/test/scala/org/apache/graphar/TestReader.scala#L99-L117
<https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/maven-projects/spark/graphar/src/test/scala/org/apache/graphar/TestReader.scala#L99-L117>
json test can be: test("read vertex chunks") {// construct the vertex
information val prefix = testData + "/ldbc_sample/json/" val vertex_yaml =
prefix + "Person.vertex.yml" val vertex_info =
VertexInfo.loadVertexInfo(vertex_yaml, spark) // construct the vertex
reader val reader = new VertexReader(prefix, vertex_info, spark) // test
reading the number of vertices assert(reader.readVerticesNumber() == 903)
val property_group = vertex_info.getPropertyGroup("gender") // test reading
a single property chunk val single_chunk_df =
reader.readVertexPropertyChunk(property_group, 0)
assert(single_chunk_df.columns.length == 4) assert(single_chunk_df.count()
== 100) val cond = "gender = 'female'" var df_pd =
single_chunk_df.select("firstName", "gender").filter(cond) - pyspark
https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/pyspark/tests/test_reader.py#L29-L67
<https://github.com/apache/incubator-graphar/blob/ff057cf9bfb3325e2822b31a3e3041e3314c2d97/pyspark/tests/test_reader.py#L29-L67>
json test can be: def test_vertex_reader_with_json(spark):
initialize(spark) vertex_info = VertexInfo.load_vertex_info(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/")
.joinpath("Person.vertex.yml") .absolute() .str() ) vertex_reader =
VertexReader.from_python(
GRAPHAR_TESTS_EXAMPLES.joinpath("/ldbc_sample/json/").absolute().str(),
vertex_info, ) assert VertexReader.from_scala(vertex_reader.to_scala()) is
not None assert vertex_reader.read_vertices_number() > 0 assert (
vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("name") ).count() > 0 ) assert (
vertex_reader.read_vertex_property_chunk(
vertex_info.get_property_groups()[0], 0 ).count() > 0 ) assert (
vertex_reader.read_all_vertex_property_groups().count() >=
vertex_reader.read_vertex_property_group(
vertex_info.get_property_group("age") ).count() ) assert (
vertex_reader.read_multiple_vertex_property_groups(
[vertex_info.get_property_group("name")] ).count() > 0 ) — Reply to this
email directly, view it on GitHub <#518 (comment)
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Hi, @amygbAI <https://github.com/amygbAI> Can you add me to your graphar
folk repo's collaborator? I can help you fix the format and test.
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the
|
cpp/test/tmp
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/* |
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what's the file for? It seems this is a temporary file?
cpp/test/test_arrow_chunk_reader.cc
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std::string vertex_info_path = | ||
test_data_dir + "ldbc_sample/json/Person.vertex.yml"; | ||
std::cout << "Vertex info path: " << vertex_info_path << std::endl; | ||
auto fs = FileSystemFromUriOrPath(prefix).value(); |
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You are not define the prefix
variable, see the CI report
cpp/test/test_arrow_chunk_reader.cc
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auto new_pg = CreatePropertyGroup({new_property}, pg->GetFileType(), | ||
pg->GetPrefix()); | ||
auto maybe_reader = | ||
VertexPropertyArrowChunkReader::Make(vertex_info, new_pg, prefix); |
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Ditto, see report
ok, pushed .. though i am not sure why this would fail for certain OS and
not the others ..also can this test directory also please be included in
the CMakeLists.txt
…On Mon, Jun 17, 2024 at 1:30 PM Weibin Zeng ***@***.***> wrote:
BTW, You can watch the Details, there are the reports for the CI/CD, you
can check the report and find the reason why the CI failed.
2024-06-17.15.54.59.png (view on web)
<https://github.com/apache/incubator-graphar/assets/11835645/388c7151-6a2f-4795-a9e9-204dde95350a>
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Signed-off-by: amygbAI <80807752+amygbAI@users.noreply.github.com>
Signed-off-by: acezen <qiaozi.zwb@alibaba-inc.com>
Signed-off-by: acezen <qiaozi.zwb@alibaba-inc.com>
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Signed-off-by: acezen <qiaozi.zwb@alibaba-inc.com>
Hi, @amygbAI , I have fix the c++ format with clang-format-8, and do some changes:
|
...park/datasources-32/src/main/scala/org/apache/spark/sql/graphar/json/JSONWriterBuilder.scala
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...park/datasources-32/src/main/scala/org/apache/spark/sql/graphar/json/JSONWriterBuilder.scala
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...park/datasources-33/src/main/scala/org/apache/spark/sql/graphar/json/JSONWriterBuilder.scala
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...park/datasources-33/src/main/scala/org/apache/spark/sql/graphar/json/JSONWriterBuilder.scala
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maven-projects/spark/datasources-33/src/main/scala/org/apache/spark/sql/graphar/GarTable.scala
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Hi, @amygbAI, I think the the PR is overall LGTM, you may fix the remaining problem base on Sem's comments. |
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after making the changes when i tried to push git showed me some conflicts and after gpt + google search i followed the below git stash for some reason now it shows some conflict in the scripts file AND also in the cpp file filesystem.cc .. totally confused |
That's because your branch and main modified the same file. You need to rebase the |
Or just revert the |
thanks .. done
…On Fri, Jun 21, 2024 at 1:08 PM Weibin Zeng ***@***.***> wrote:
after making the changes when i tried to push git showed me some conflicts
and after gpt + google search i followed the below
git stash git pull origin 170-feat-support-json-payload-file-format git
stash pop git add . git commit -m "msg" git push origin
170-feat-support-json-payload-file-format
for some reason now it shows some conflict in the scripts file AND also in
the cpp file filesystem.cc .. totally confused
Or just revert the maven-projects/spark/scripts/run-ldbc-sample2graphar.sh
to csv, we don't need to change this file.
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Hi, @amygbAI, seems that you have reverted the changes that I made ╥﹏╥ |
dang .. can u just give me the exact version on which u made the changes, i
ll do a hard reset to that version and then add my final changes on it ..
…On Mon, Jun 24, 2024 at 8:19 AM Weibin Zeng ***@***.***> wrote:
origin
Hi, @amygbAI <https://github.com/amygbAI>, seems that you have reverted
the changes that I made ╥﹏╥
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It's OK now. I have reset to the commit and apply your final change to it. And it should be OK now. |
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LGTM, thanks for the work!
Hi, @SemyonSinchenko, this change is OK to me, could you give a review again?
appreciate all your patience .. i think i made it harder than it actually
should have been
…On Mon, Jun 24, 2024 at 8:42 AM Weibin Zeng ***@***.***> wrote:
***@***.**** approved this pull request.
LGTM, thanks for the work!
Hi, @SemyonSinchenko <https://github.com/SemyonSinchenko>, this change is
OK to me, could you give a review again?
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Don't be bothered about that. Since this is your first time to contribute to a open source project, your continue contribution and the final work are excellent. Hope you can join the community and continue to contribute to GraphAr.:) |
appreciate it.. will be on the lookout to help with further dev and bug
fixes !
On Mon, Jun 24, 2024 at 10:46 AM Weibin Zeng ***@***.***>
wrote:
… appreciate all your patience .. i think i made it harder than it actually
should have been
… <#m_-4654679496454462024_>
On Mon, Jun 24, 2024 at 8:42 AM Weibin Zeng *@*.*> wrote: @.** approved
this pull request. LGTM, thanks for the work! Hi, @SemyonSinchenko
<https://github.com/SemyonSinchenko> https://github.com/SemyonSinchenko,
this change is OK to me, could you give a review again? — Reply to this
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Don't be bothered about that. Since this is your first time to contribute
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excellent. Hope you can join the community and continue to contribute to
GraphAr.:)
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I will review it again in the evening. |
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LGTM. Thanks for the contribution @amygbAI !
Reason for this PR This is a rebased pull request, so to speak of ( due to the issue with JSONOptions being private in spark 3.2 and 3.3 ) ..also added test artifacts separately in incubator-graphar-testing. Was able to compile with spark 3.2 and 3.3 ( in both datasources-32 and datasources-33 ) What changes are included in this PR? Changes in datasources-32 and datasources-33 Changes in cpp Changes in pyspark Are these changes tested? yes, added the generated ldbc samples in incubator-graphar-testing/ldbc_sample/json Are there any user-facing changes? None --------- Signed-off-by: amygbAI <80807752+amygbAI@users.noreply.github.com> Signed-off-by: acezen <qiaozi.zwb@alibaba-inc.com> Co-authored-by: Ubuntu <bithika@amygb.ai> Co-authored-by: acezen <qiaozi.zwb@alibaba-inc.com>
Reason for this PR
This is a rebased pull request, so to speak of ( due to the issue with JSONOptions being private in spark 3.2 and 3.3 ) ..also added test artifacts separately in incubator-graphar-testing. Was able to compile with spark 3.2 and 3.3 ( in both datasources-32 and datasources-33 )
What changes are included in this PR?
Changes in datasources-32 and datasources-33
Changes in cpp
Changes in pyspark
Are these changes tested?
yes, added the generated ldbc samples in incubator-graphar-testing/ldbc_sample/json
Are there any user-facing changes?
not that i am aware of
None