Enable Safe Composition of Metadata for ShardingSphere Proxy Native

[linghengqian]

For #29052.

Changes proposed in this pull request:

• Enable Safe Composition of Metadata for ShardingSphere Proxy Native. Also for Support connecting to OpenGauss via DistSQL in Proxy Native #33139 (review) .

To make usage of third-party reachability metadata safe we must guarantee that metadata addition can't break existing programs. This is currently not the case

• Adds GraalVM Reachability Metadata for ch.qos.logback:logback-core:1.2.13

• Adds GraalVM Reachability Metadata for com.alibaba:druid:1.2.7

• Adds GraalVM Reachability Metadata for com.github.docker-java:docker-java:3.4.0

• Adds GraalVM Reachability Metadata for com.mysql:mysql-connector-j:8.3.0

• Adds GraalVM Reachability Metadata for io.grpc:grpc-netty:1.65.1

• Adds GraalVM Reachability Metadata for io.vertx:vertx-core:4.5.1

• Adds GraalVM Reachability Metadata for io.netty:netty-transport-classes-epoll:4.1.112.Final

• Adds GraalVM Reachability Metadata for org.apache.groovy:groovy:4.0.22

• Adds GraalVM Reachability Metadata for org.apache.hadoop:hadoop-common:3.3.6

• Adds GraalVM Reachability Metadata for org.apiguardian:apiguardian-api:1.1.2

• Adds GraalVM Reachability Metadata for org.jboss.logging:jboss-logging:3.2.1.Final

• Adds GraalVM Reachability Metadata for org.jboss.narayana.jta:jta:5.12.7.Final

• Adds GraalVM Reachability Metadata for org.junit.jupiter:junit-jupiter:5.11.1

• Adds GraalVM Reachability Metadata for org.testcontainers:junit-jupiter:1.20.2

• Adds GraalVM Reachability Metadata for com.typesafe:config:1.2.1

• Adds GraalVM Reachability Metadata for com.google.protobuf:protobuf-java:3.21.12. This sounds like what I missed in Add support for com.google.protobuf:protobuf-java-util:3.21.12 oracle/graalvm-reachability-metadata#167 .

• Adds GraalVM Reachability Metadata for org.springframework:spring-jcl:5.3.27

• Adds GraalVM Reachability Metadata for com.clickhouse:clickhouse-jdbc:0.6.3

• Updates documentation. According to Unable to apply parallel builds to thread-unsafe native-maven-plugin graalvm/native-build-tools#619 , GraalVM Native Build Tools 0.10.3 no longer prevents parallel builds of Maven.

• As for [GR-49770] Safe Composition of Metadata  oracle/graal#5173, the SCM proposal involving buildArg entered GraalVM CE For JDK22 as an experimental option and became an official option on GraalVM CE For JDK23. The SCM proposal brings more readable Error Logs, which is definitely beneficial to contributors. The Error Logs brought by the SCM proposal are as follows.

-H:+UnlockExperimentalVMOptions -H:ThrowMissingRegistrationErrors= -H:MissingRegistrationReportingMode=Warn

com.oracle.svm.core.jdk.resources.MissingResourceRegistrationError: The program tried to access the resource at path 

   META-INF/services/javax.xml.parsers.SAXParserFactory

 without it being registered as reachable. Add it to the resource metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#resources-and-resource-bundles for help
  java.base@22.0.2/java.util.ServiceLoader$3.hasNext(ServiceLoader.java:1387)
  java.xml@22.0.2/javax.xml.parsers.FactoryFinder$1.run(FactoryFinder.java:255)
  java.base@22.0.2/java.security.AccessController.executePrivileged(AccessController.java:128)
  java.base@22.0.2/java.security.AccessController.doPrivileged(AccessController.java:319)
org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively access method

   ch.qos.logback.core.encoder.Encoder#valueOf(java.lang.String)

 without it being registered for runtime reflection. Add ch.qos.logback.core.encoder.Encoder#valueOf(java.lang.String) to the reflection metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#reflection for help.
  java.base@22.0.2/java.lang.Class.getMethod(DynamicHub.java:1070)
  ch.qos.logback.core.joran.util.StringToObjectConverter.getValueOfMethod(StringToObjectConverter.java:101)
  ch.qos.logback.core.joran.util.StringToObjectConverter.followsTheValueOfConvention(StringToObjectConverter.java:110)
  ch.qos.logback.core.joran.util.StringToObjectConverter.canBeBuiltFromSimpleString(StringToObjectConverter.java:39)

• On ShardingSphere's own GRM side, remove {"excludeClasses": "java.**"}. Because this type of GRM begins to be required by Safe Composition of Metadata. There are obviously too many java.** GRM JSONs that need to be defined.

    {"excludeClasses": "java.**"},
    {"includeClasses": "java.io.BufferedWriter"},
    {"includeClasses": "java.io.Closeable"},
    {"includeClasses": "java.io.Flushable"},
    {"includeClasses": "java.io.InputStream"},
    {"includeClasses": "java.io.OutputStream"},
    {"includeClasses": "java.io.Reader"},
    {"includeClasses": "java.io.Writer"},
    {"includeClasses": "java.lang.Appendable"},
    {"includeClasses": "java.lang.AutoCloseable"},
    {"includeClasses": "java.lang.Boolean"},
    {"includeClasses": "java.lang.ClassLoader"},
    {"includeClasses": "java.lang.CharSequence"},
    {"includeClasses": "java.lang.Comparable"},
    {"includeClasses": "java.lang.Integer"},
    {"includeClasses": "java.lang.Iterable"},
    {"includeClasses": "java.lang.Long"},
    {"includeClasses": "java.lang.Number"},
    {"includeClasses": "java.lang.Process"},
    {"includeClasses": "java.lang.Readable"},
    {"includeClasses": "java.lang.constant.ConstantDesc"},
    {"includeClasses": "java.lang.reflect.AnnotatedElement"},
    {"includeClasses": "java.lang.management.RuntimeMXBean"},
    {"includeClasses": "java.util.AbstractCollection"},
    {"includeClasses": "java.util.AbstractMap"},
    {"includeClasses": "java.util.Collection"},
    {"includeClasses": "java.util.Deque"},
    {"includeClasses": "java.util.Enumeration"},
    {"includeClasses": "java.util.HashSet"},
    {"includeClasses": "java.util.Iterator"},
    {"includeClasses": "java.util.LinkedHashSet"},
    {"includeClasses": "java.util.List"},
    {"includeClasses": "java.util.Map"},
    {"includeClasses": "java.util.NavigableSet"},
    {"includeClasses": "java.util.Properties"},
    {"includeClasses": "java.util.Set"},
    {"includeClasses": "java.util.SortedMap"},
    {"includeClasses": "java.util.SortedSet"},
    {"includeClasses": "java.util.Timer"},
    {"includeClasses": "java.util.concurrent.BlockingQueue"},
    {"includeClasses": "java.util.concurrent.atomic.LongAdder"}

org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively access

   java.util.Collection.getMethods()

 without it being registered for runtime reflection. Add java.util.Collection.getMethods() to the reflection metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#reflection for help.
  java.base@22.0.2/java.lang.Class.getMethods(DynamicHub.java:1022)
  org.codehaus.groovy.reflection.stdclasses.CachedSAMClass.getSAMMethod(CachedSAMClass.java:172)
  org.codehaus.groovy.reflection.ClassInfo.isSAM(ClassInfo.java:388)
  org.codehaus.groovy.reflection.ClassInfo.createCachedClass(ClassInfo.java:378)
org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively access

   java.util.List.getMethods()

 without it being registered for runtime reflection. Add java.util.List.getMethods() to the reflection metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#reflection for help.
  java.base@22.0.2/java.lang.Class.getMethods(DynamicHub.java:1022)
  org.codehaus.groovy.reflection.stdclasses.CachedSAMClass.getSAMMethod(CachedSAMClass.java:172)
  org.codehaus.groovy.reflection.ClassInfo.isSAM(ClassInfo.java:388)
  org.codehaus.groovy.reflection.ClassInfo.createCachedClass(ClassInfo.java:378)

---

Before committing this PR, I'm sure that I have checked the following options:

• My code follows the code of conduct of this project.
• I have self-reviewed the commit code.
• I have (or in comment I request) added corresponding labels for the pull request.
• I have passed maven check locally : ./mvnw clean install -B -T1C -Dmaven.javadoc.skip -Dmaven.jacoco.skip -e.
• I have made corresponding changes to the documentation.
• I have added corresponding unit tests for my changes.

[linghengqian]

• This PR became quite complicated because the Warning Log even included GraalVM CE's internal missing GRM, which definitely involved multiple potential GraalVM bugs. Before supporting compiling shardingsphere project with GraalVM CE For JDK23, I needed to change -H:ThrowMissingRegistrationErrors= to -H:ThrowMissingRegistrationErrors=org.apache.shardingsphere to avoid a wider range of impacts.

org.graalvm.nativeimage.MissingReflectionRegistrationError: The program tried to reflectively access

   com.oracle.svm.core.genscavenge.HeapImplMemoryMXBean.getConstructors()

 without it being registered for runtime reflection. Add com.oracle.svm.core.genscavenge.HeapImplMemoryMXBean.getConstructors() to the reflection metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#reflection for help.
  java.base@22.0.2/java.lang.Class.getConstructors(DynamicHub.java:1028)
  java.management@22.0.2/com.sun.jmx.mbeanserver.MBeanIntrospector.findConstructors(MBeanIntrospector.java:461)
  java.management@22.0.2/com.sun.jmx.mbeanserver.MBeanIntrospector.getClassMBeanInfo(MBeanIntrospector.java:432)
  java.management@22.0.2/com.sun.jmx.mbeanserver.MBeanIntrospector.getMBeanInfo(MBeanIntrospector.java:391)

• The path scanned by seata client is also suspicious. I don't believe the seata client uses the registry file directly.

com.oracle.svm.core.jdk.resources.MissingResourceRegistrationError: The program tried to access the resource at path 

   registry

 without it being registered as reachable. Add it to the resource metadata to solve this problem. See https://www.graalvm.org/latest/reference-manual/native-image/metadata/#resources-and-resource-bundles for help
  java.base@22.0.2/java.lang.ClassLoader.getResource(ClassLoader.java:1407)
  org.apache.seata.config.FileConfiguration.getFileFromClasspath(FileConfiguration.java:194)
  org.apache.seata.config.FileConfiguration.getConfigFile(FileConfiguration.java:144)
  org.apache.seata.config.FileConfiguration.<init>(FileConfiguration.java:108)

• Also see,
  • Limit external configuration sources parsing in native-mode quarkusio/quarkus#42140
  • Improve exception handling when application fails to start quarkusio/quarkus#42270
  • [GR-50180] Do not register inner classes for Class.forName oracle/graal#7876
  • Run metadata tests with -H:+ThrowMissingRegistrationErrors. oracle/graalvm-reachability-metadata#499