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[SPARK-10222] [GRAPHX] [DOCS] More thoroughly deprecate Bagel in favor of GraphX #8731

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Finish deprecating Bagel; remove reference to nonexistent example

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[SPARK-10222] [GRAPHX] [DOCS] More thoroughly deprecate Bagel in favor of GraphX #8731

Finish deprecating Bagel; remove reference to nonexistent example
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