[SYSTEMDS-3807] Fix test code coverage and minor lineage issues

Recently ubuntu-latest changed to ubuntu-24 which changed the default
java version from 11 to 17. This seems to cause problems, even when
fixing the java version to 11. So in order to restore the code coverage
support, we now fix ubuntu-22 until we can rebuild our docker image.

.github/workflows/javaTests.yml

@@ -48,7 +48,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest]
+        os: [ubuntu-22.04]
         tests: [
           "org.apache.sysds.test.applications.**",
           "**.test.usertest.**",
@@ -124,7 +124,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest]
+        os: [ubuntu-22.04]
         java: ['11']
         javadist: ['adopt']
     steps:

src/main/java/org/apache/sysds/runtime/controlprogram/context/ExecutionContext.java

@@ -624,13 +624,10 @@ public void setMatrixOutputAndLineage(String varName, MatrixBlock outputData, Li
 		mo.release();
 	}
 
-	@SuppressWarnings("unused")
 	public void setMatrixOutputAndLineage(String varName, Future<MatrixBlock> fmb, LineageItem li) {
 		if (isAutoCreateVars() && !containsVariable(varName)) {
-			//FIXME without adding this fmo object here to the symbol table
-			// it would crash in federated operations (autocreatevars)
-			MatrixObject fmo = new MatrixObjectFuture(Types.ValueType.FP64,
-				OptimizerUtils.getUniqueTempFileName(), fmb);
+			setVariable(varName, new MatrixObjectFuture(Types.ValueType.FP64,
+				OptimizerUtils.getUniqueTempFileName(), fmb));
 		}
 		MatrixObject mo = getMatrixObject(varName);
 		MatrixObjectFuture fmo = new MatrixObjectFuture(mo, fmb);

src/main/java/org/apache/sysds/runtime/instructions/cp/ParameterizedBuiltinCPInstruction.java

@@ -420,14 +420,7 @@ else if(cacheData instanceof FrameObject) {
 			}
 			else if(cacheData instanceof ListObject) {
 				out = DataConverter.toString((ListObject) cacheData,
-					rows,
-					cols,
-					sparse,
-					separator,
-					lineSeparator,
-					rows,
-					cols,
-					decimal);
+					rows, cols, sparse, separator, lineSeparator, rows, cols, decimal);
 			}
 			else {
 				throw new DMLRuntimeException("toString only converts "
@@ -549,9 +542,7 @@ else if(opcode.equalsIgnoreCase("lowertri") || opcode.equalsIgnoreCase("uppertri
 		else if(opcode.equalsIgnoreCase("transformdecode") || opcode.equalsIgnoreCase("transformapply")) {
 			CPOperand target = new CPOperand(params.get("target"), ValueType.FP64, DataType.FRAME);
 			CPOperand meta = getLiteral("meta", ValueType.UNKNOWN, DataType.FRAME);
-			CPOperand spec = getStringLiteral("spec");
-			//FIXME: Taking only spec file name as a literal leads to wrong reuse
-			//TODO: Add Embedding to the lineage item
+			CPOperand spec = new CPOperand(params.get("spec"), ValueType.STRING, DataType.SCALAR);
 			return Pair.of(output.getName(),
 				new LineageItem(getOpcode(), LineageItemUtils.getLineage(ec, target, meta, spec)));
 		}