Update tensorflow to >=2.16 #140
Conversation
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Thank you so much, @misialq! I’ve been meaning to work on this issue a while, but haven’t had the chance. I really appreciate you taking the time to help with this! Hopefully, this will make it easier to transition from TensorFlow to PyTorch or JAX. There are still a few TensorFlow functions in use, but I'll check if they can be replaced with Keras functions. By the way, have you evaluated whether the speed is affected? |
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Hey @apcamargo, I have not tried to evaluate how the speed would be affected but from my superficial test it did not feel like there was much of a difference. Thank you for accepting the PR! Are you by any chance planning to release a new version in the nearest future? |
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I was planning to try replacing TensorFlow with PyTorch before the next release (and also testing out this PR to reduce loading time), but if you need a release with Keras 3 soon, I can make one with the current code. |
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It would be super nice if we could get a version with the updated tensorflow available on bioconda - it would help us greatly as we are running into some dependency issues with the current version... Thanks a lot in advance! |
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Done :) |
Closes #84.
I tested the changes by running the
nn-classificationworkflow on a small dataset and compared the results to the previous version - all seemed fine.