Refactor to use Pytorch for training models #835
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests and Linting | |
| on: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| jobs: | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| # requites to grab the history of the PR | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v3 | |
| - uses: pre-commit/action@v3.0.0 | |
| with: | |
| extra_args: --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} | |
| Pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache downloaded resources | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.data/ | |
| key: resources | |
| - name: Set up Java | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: "temurin" # See 'Supported distributions' for available options | |
| java-version: "8" | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install -e '.[dev,setup]' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: python -m pytest --cov edsnlp --cov-report xml --ignore tests/test_docs.py | |
| if: matrix.python-version != '3.9' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: python -m pytest --cov edsnlp --cov-report xml | |
| if: matrix.python-version == '3.9' | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v2 | |
| if: matrix.python-version == '3.9' | |
| Documentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.9" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[docs]' | |
| - name: Build documentation | |
| run: | | |
| mkdocs build --clean | |
| Installation: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install library | |
| run: | | |
| pip install . |