Code

Biology pipeline testing#27

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svittoz merged 135 commits intomainaphp/edsteva:mainfrom bioprob_testaphp/edsteva:bioprob_testCopy head branch name to clipboardSep 14, 2023

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Commits

Commits on Feb 8, 2023

• First commit for testing

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• Hot Fix

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• remove root termino

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Commits on Mar 21, 2023

• Full refacto

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Commits on Mar 23, 2023

• Add registry

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• Parquet connector to convert pandas via pyarrow

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Commits on Mar 24, 2023

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Commits on Mar 27, 2023

• Hot fix

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Commits on Mar 31, 2023

• Add Specialties_sets in Probe index

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• Get child care site in the filter care site

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Commits on Apr 13, 2023

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Commits on Apr 17, 2023

• Add n_result to viz

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• Remove json_dir

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• Add manual x_axis and y axis

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Commits on May 3, 2023

• First cleaning

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Commits on May 10, 2023

• Ready for testing on real data

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• Fix test

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Commits on May 12, 2023

• Fix the model

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Commits on May 16, 2023

• Fix impute missing event

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Commits on May 30, 2023

• Separate concepts set and concept codes

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Commits on Jun 2, 2023

• Hot fix

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Commits on Jun 5, 2023

• Fix impute missing column for note probe

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Commits on Jun 7, 2023

• Update impute missing date

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Commits on Jun 9, 2023

• Improve missing dates algo

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• Hot fix: sort date before loss optimization

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Commits on Jul 5, 2023

• adding age and pmsi type filter

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Commits on Jul 6, 2023

• merging master

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• solving conflicts

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• solving conflicts

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• solving conflicts

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• tests correction

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Commits on Jul 11, 2023

• small fix

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Commits on Jul 25, 2023

• precommit

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• persons test

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• test

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• test

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Commits on Jul 26, 2023

• test synthetic

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• fix test

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• fix tests

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Commits on Jul 28, 2023

• correcting test

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• fixing error

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• person cleaning

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• changing naming

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• adding tqdm

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• Merge branch 'biology_age_pmsi' of https://github.com/aphp/edsteva into biology_age_pmsi

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• remove change

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• Merge branch 'main' into biology_age_pmsi

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• persons to person

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• Merge branch 'biology_age_pmsi' of https://github.com/aphp/edsteva into biology_age_pmsi

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• measurement place

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• remove itertools

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• Merge branch 'biology_age_pmsi' of https://github.com/aphp/edsteva into biology_age_pmsi

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• fix test

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Commits on Aug 3, 2023

• Adam code review

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Commits on Sep 6, 2023

• adding all modifications

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• mering main

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• merge pb fixed

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• adding all modifications

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• remove .lock

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• adding pyspark

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• remove probe

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• fix coverage

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• add filtering on notes and measurements

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• test coverage

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• kwargs

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Commits on Sep 8, 2023

• Apply suggestions from code review

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• fix typing

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• cost / person not computed if no need

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• add age_ranges

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• Merge branch 'adding_ghm_cim' of https://github.com/aphp/edsteva into adding_ghm_cim

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• adding age ranges

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• cost not None

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Commits on Sep 11, 2023

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Commits on Sep 13, 2023

• adding a test on biology pipeline

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• merging main

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Commits on Sep 14, 2023

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