Update apollo package dependencies

[trevor-scheer]

Using the current versions of these dependencies rather than the alphas (from an alpha branch of the server repo) is causing multiple versions of some of these dependencies to appear in our platform repo's release-federation branch. I'm not certain this is the actual problem, but I do feel it brings us one step closer to resolving it.

The error we're seeing in CI looks something like this, which leads me to suspect apollo-env (and other non-alpha apollo- packages):

Trevors-MacBook-Pro-2:apollo-platform-commercial trevorscheer$ npm run clean && npm ci

> apollo-platform-commercial-monorepo@ clean /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial
> git clean -dfqX -- ./node_modules **/{dist,node_modules}/ ./packages/*/tsconfig.tsbuildinfo

npm WARN tar ENOENT: no such file or directory, open '/Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/node_modules/apollo-federation/node_modules/apollo-env/package.json'
npm WARN tar ENOENT: no such file or directory, open '/Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/node_modules/apollo-federation/node_modules/node-fetch/lib/index.mjs'
npm ERR! path /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/node_modules/apollo-gateway/node_modules/apollo-federation/node_modules/core-js
npm ERR! code ENOTEMPTY
npm ERR! errno -66
npm ERR! syscall rmdir
npm ERR! ENOTEMPTY: directory not empty, rmdir '/Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/node_modules/apollo-gateway/node_modules/apollo-federation/node_modules/core-js'

npm ERR! A complete log of this run can be found in:
npm ERR!     /Users/trevorscheer/.npm/_logs/2019-04-24T18_56_18_598Z-debug.log

npm ls apollo-env shows multiple versions in use (and possibly some bad de-duping?) I'm not sure why the deps aren't being met in some places.

Trevors-MacBook-Pro-2:apollo-platform-commercial trevorscheer$ npm ls apollo-env
apollo-platform-commercial-monorepo@ /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial
├─┬ apollo-federation@0.1.0-alpha.7 -> /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/packages/apollo-federation
│ ├── apollo-env@0.4.1-alpha.1 
│ └─┬ apollo-graphql@0.2.1-alpha.1
│   └── apollo-env@0.4.1-alpha.1  deduped
├─┬ apollo-gateway@0.1.0-alpha.3 -> /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/packages/apollo-gateway
│ ├── apollo-env@0.4.1-alpha.1 
│ ├─┬ UNMET DEPENDENCY apollo-federation@file:packages/apollo-federation
│ │ ├── UNMET DEPENDENCY apollo-env@0.4.1-alpha.1 
│ │ └─┬ UNMET DEPENDENCY apollo-graphql@0.2.1-alpha.1
│ │   └── UNMET DEPENDENCY apollo-env@0.4.1-alpha.1 
│ ├─┬ apollo-graphql@0.2.1-alpha.1
│ │ └── apollo-env@0.4.1-alpha.1  deduped
│ └─┬ apollo-server-express@2.5.0-alpha.6
│   └─┬ apollo-server-core@2.5.0-alpha.6
│     ├─┬ @apollographql/apollo-tools@0.3.5
│     │ └── apollo-env@0.4.0 
│     └─┬ apollo-engine-reporting@1.1.0-alpha.6
│       └─┬ apollo-graphql@0.2.0
│         └── apollo-env@0.4.0 
├─┬ apollo-server-core@2.5.0-alpha.6
│ ├─┬ @apollographql/apollo-tools@0.3.5
│ │ └── apollo-env@0.4.0 
│ └─┬ apollo-engine-reporting@1.1.0-alpha.6
│   └─┬ apollo-graphql@0.2.0
│     └── apollo-env@0.4.0 
└─┬ apollo-server-plugin-operation-registry@0.1.0-alpha.2 -> /Users/trevorscheer/Desktop/Repos/apollo-platform-commercial/packages/apollo-server-plugin-operation-registry
  └─┬ apollo-graphql@0.2.1-alpha.1
    └── apollo-env@0.4.1-alpha.1 

TODO:

• Update CHANGELOG.md with your change (include reference to issue & this PR)
• Make sure all of the significant new logic is covered by tests
• Rebase your changes on master so that they can be merged easily
• Make sure all tests and linter rules pass