Merge pull request #409 from appliedepi/240819_removing_oldbook

Fix the unknown language from dropdown button
appliedepi · Sep 18, 2024 · 31aef2f · 31aef2f
2 parents 76fe9a8 + 60e351e
commit 31aef2f
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Showing 582 changed files with 20,354 additions and 20,754 deletions.
diff --git a/html_outputs/es/index.es.html b/html_outputs/es/index.es.html
@@ -1388,7 +1388,7 @@ <h1 class="title">EpiRhandbook en español</h1>
 
     </div>
   </div>
-</footer><script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","descPosition":"bottom","openEffect":"zoom","loop":false,"selector":".lightbox"});
+</footer><script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"descPosition":"bottom","openEffect":"zoom","closeEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/html_outputs/es/new_pages/age_pyramid.es.html b/html_outputs/es/new_pages/age_pyramid.es.html
diff --git a/html_outputs/es/new_pages/basics.es.html b/html_outputs/es/new_pages/basics.es.html
@@ -292,7 +292,6 @@
 <a class="dropdown-item" href="/pt/new_pages/basics.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/basics.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/basics.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/basics.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container"> 
@@ -3097,7 +3096,7 @@ <h1 class="title"><span id="r-basics" class="quarto-section-identifier"><span cl
 
     </div>
   </div>
-</footer><script>var lightboxQuarto = GLightbox({"openEffect":"zoom","loop":false,"descPosition":"bottom","closeEffect":"zoom","selector":".lightbox"});
+</footer><script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","selector":".lightbox","descPosition":"bottom","loop":false,"openEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/html_outputs/es/new_pages/characters_strings.es.html b/html_outputs/es/new_pages/characters_strings.es.html
diff --git a/html_outputs/es/new_pages/cleaning.es.html b/html_outputs/es/new_pages/cleaning.es.html
diff --git a/html_outputs/es/new_pages/collaboration.es.html b/html_outputs/es/new_pages/collaboration.es.html
@@ -292,7 +292,6 @@
 <a class="dropdown-item" href="/pt/new_pages/collaboration.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/collaboration.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/collaboration.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/collaboration.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container"> 
@@ -2056,7 +2055,7 @@ <h1 class="title"><span id="version-control-and-collaboration-with-git-and-githu
 
     </div>
   </div>
-</footer><script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","selector":".lightbox","descPosition":"bottom","loop":false,"openEffect":"zoom"});
+</footer><script>var lightboxQuarto = GLightbox({"loop":false,"selector":".lightbox","closeEffect":"zoom","descPosition":"bottom","openEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/html_outputs/es/new_pages/combination_analysis.es.html b/html_outputs/es/new_pages/combination_analysis.es.html
diff --git a/...ts/es/new_pages/combination_analysis.es_files/figure-html/unnamed-chunk-1-1.png b/...ts/es/new_pages/combination_analysis.es_files/figure-html/unnamed-chunk-1-1.png
diff --git a/html_outputs/es/new_pages/contact_tracing.es.html b/html_outputs/es/new_pages/contact_tracing.es.html
diff --git a/html_outputs/es/new_pages/data_table.es.html b/html_outputs/es/new_pages/data_table.es.html
@@ -289,7 +289,6 @@
 <a class="dropdown-item" href="/pt/new_pages/data_table.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/data_table.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/data_table.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/data_table.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container"> 

diff --git a/html_outputs/es/new_pages/data_used.es.html b/html_outputs/es/new_pages/data_used.es.html
@@ -292,7 +292,6 @@
 <a class="dropdown-item" href="/pt/new_pages/data_used.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/data_used.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/data_used.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/data_used.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container"> 
@@ -1502,7 +1501,7 @@ <h1 class="title"><span id="download-handbook-and-data" class="quarto-section-id
 
     </div>
   </div>
-</footer><script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","descPosition":"bottom","openEffect":"zoom","selector":".lightbox","loop":false});
+</footer><script>var lightboxQuarto = GLightbox({"descPosition":"bottom","closeEffect":"zoom","openEffect":"zoom","loop":false,"selector":".lightbox"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/html_outputs/es/new_pages/dates.es.html b/html_outputs/es/new_pages/dates.es.html
diff --git a/html_outputs/es/new_pages/deduplication.es.html b/html_outputs/es/new_pages/deduplication.es.html
diff --git a/html_outputs/es/new_pages/diagrams.es.html b/html_outputs/es/new_pages/diagrams.es.html
diff --git a/html_outputs/es/new_pages/directories.es.html b/html_outputs/es/new_pages/directories.es.html
@@ -297,7 +297,6 @@
 <a class="dropdown-item" href="/pt/new_pages/directories.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/directories.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/directories.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/directories.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container"> 
@@ -781,7 +780,7 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 <div class="cell">
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a>fs<span class="sc">::</span><span class="fu">dir_tree</span>(<span class="at">path =</span> <span class="fu">here</span>(<span class="st">"data"</span>), <span class="at">recurse =</span> <span class="cn">TRUE</span>)</span></code><button title="Copiar al portapapeles" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data
+<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data
 ├── africa_countries.geo.json
 ├── cache
 │   └── epidemic_models
@@ -945,8 +944,8 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 <div class="sourceCode cell-code" id="cb6"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a><span class="co"># rutas de archivos</span></span>
 <span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a><span class="fu">dir_ls</span>(<span class="fu">here</span>(<span class="st">"data"</span>, <span class="st">"gis"</span>, <span class="st">"population"</span>))</span></code><button title="Copiar al portapapeles" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data/gis/population/sle_admpop_adm3_2020.csv
-C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data/gis/population/sle_population_statistics_sierraleone_2020.xlsx</code></pre>
+<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/gis/population/sle_admpop_adm3_2020.csv
+C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/gis/population/sle_population_statistics_sierraleone_2020.xlsx</code></pre>
 </div>
 </div>
 <p>Para obtener toda la información de los metadatos de cada archivo en un directorio, (por ejemplo, la ruta, la fecha de modificación, etc.) puedes utilizar <code>dir_info()</code> de <strong>fs</strong>.</p>
@@ -958,8 +957,8 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 <p>Aquí está el dataframe devuelto. Desplázate a la derecha para ver todas las columnas.</p>
 <div class="cell">
 <div class="cell-output-display">
-<div class="datatables html-widget html-fill-item" id="htmlwidget-e45127fb26b1580ede6b" style="width:100%;height:auto;"></div>
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+<div class="datatables html-widget html-fill-item" id="htmlwidget-e3abcea1a02cb2a5ca26" style="width:100%;height:auto;"></div>
+<script type="application/json" data-for="htmlwidget-e3abcea1a02cb2a5ca26">{"x":{"filter":"none","vertical":false,"data":[["C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/gis/population/sle_admpop_adm3_2020.csv","C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/gis/population/sle_population_statistics_sierraleone_2020.xlsx"],["file","file"],[26939,57850],[33206,33206],["2024-02-18T13:56:17Z","2024-02-18T13:56:17Z"],[null,null],[null,null],[1552595156,1552595156],[1,1],[0,0],[4785074605545083,4785074605545084],[4096,4096],[56,120],[0,0],[0,0],["2024-09-18T14:48:10Z","2024-09-18T14:33:57Z"],["2024-02-18T13:56:17Z","2024-02-18T13:56:17Z"],["2024-09-18T14:33:57Z","2024-09-18T14:33:57Z"]],"container":"<table class=\"white-space: nowrap\">\n  <thead>\n    <tr>\n      <th>path<\/th>\n      <th>type<\/th>\n      <th>size<\/th>\n      <th>permissions<\/th>\n      <th>modification_time<\/th>\n      <th>user<\/th>\n      <th>group<\/th>\n      <th>device_id<\/th>\n      <th>hard_links<\/th>\n      <th>special_device_id<\/th>\n      <th>inode<\/th>\n      <th>block_size<\/th>\n      <th>blocks<\/th>\n      <th>flags<\/th>\n      <th>generation<\/th>\n      <th>access_time<\/th>\n      <th>change_time<\/th>\n      <th>birth_time<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"pageLength":5,"scrollX":true,"columnDefs":[{"className":"dt-right","targets":[2,3,7,8,9,10,11,12,13,14]},{"name":"path","targets":0},{"name":"type","targets":1},{"name":"size","targets":2},{"name":"permissions","targets":3},{"name":"modification_time","targets":4},{"name":"user","targets":5},{"name":"group","targets":6},{"name":"device_id","targets":7},{"name":"hard_links","targets":8},{"name":"special_device_id","targets":9},{"name":"inode","targets":10},{"name":"block_size","targets":11},{"name":"blocks","targets":12},{"name":"flags","targets":13},{"name":"generation","targets":14},{"name":"access_time","targets":15},{"name":"change_time","targets":16},{"name":"birth_time","targets":17}],"order":[],"autoWidth":false,"orderClasses":false,"lengthMenu":[5,10,25,50,100]}},"evals":[],"jsHooks":[]}</script>
 </div>
 </div>
 </section><section id="file-information" class="level2" data-number="45.3"><h2 data-number="45.3" class="anchored" data-anchor-id="file-information">
@@ -970,15 +969,15 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 </div>
 <div class="cell">
 <div class="cell-output-display">
-<div class="datatables html-widget html-fill-item" id="htmlwidget-fd4122d12950d7ed71c3" style="width:100%;height:auto;"></div>
-<script type="application/json" data-for="htmlwidget-fd4122d12950d7ed71c3">{"x":{"filter":"none","vertical":false,"data":[["C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data/case_linelists/linelist_cleaned.rds"],["file"],[290146],[33206],["2024-09-18T10:39:56Z"],[null],[null],[1552595156],[1],[0],[1407374884962108],[4096],[568],[0],[0],["2024-09-18T11:10:11Z"],["2024-09-18T10:39:56Z"],["2024-09-18T10:37:09Z"]],"container":"<table class=\"white-space: nowrap\">\n  <thead>\n    <tr>\n      <th>path<\/th>\n      <th>type<\/th>\n      <th>size<\/th>\n      <th>permissions<\/th>\n      <th>modification_time<\/th>\n      <th>user<\/th>\n      <th>group<\/th>\n      <th>device_id<\/th>\n      <th>hard_links<\/th>\n      <th>special_device_id<\/th>\n      <th>inode<\/th>\n      <th>block_size<\/th>\n      <th>blocks<\/th>\n      <th>flags<\/th>\n      <th>generation<\/th>\n      <th>access_time<\/th>\n      <th>change_time<\/th>\n      <th>birth_time<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"pageLength":5,"scrollX":true,"columnDefs":[{"className":"dt-right","targets":[2,3,7,8,9,10,11,12,13,14]},{"name":"path","targets":0},{"name":"type","targets":1},{"name":"size","targets":2},{"name":"permissions","targets":3},{"name":"modification_time","targets":4},{"name":"user","targets":5},{"name":"group","targets":6},{"name":"device_id","targets":7},{"name":"hard_links","targets":8},{"name":"special_device_id","targets":9},{"name":"inode","targets":10},{"name":"block_size","targets":11},{"name":"blocks","targets":12},{"name":"flags","targets":13},{"name":"generation","targets":14},{"name":"access_time","targets":15},{"name":"change_time","targets":16},{"name":"birth_time","targets":17}],"order":[],"autoWidth":false,"orderClasses":false,"lengthMenu":[5,10,25,50,100]}},"evals":[],"jsHooks":[]}</script>
+<div class="datatables html-widget html-fill-item" id="htmlwidget-dbb90f4d69a6ef5aff36" style="width:100%;height:auto;"></div>
+<script type="application/json" data-for="htmlwidget-dbb90f4d69a6ef5aff36">{"x":{"filter":"none","vertical":false,"data":[["C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/case_linelists/linelist_cleaned.rds"],["file"],[290146],[33206],["2024-09-18T14:38:02Z"],[null],[null],[1552595156],[1],[0],[4503599628834384],[4096],[568],[0],[0],["2024-09-18T14:57:05Z"],["2024-09-18T14:38:02Z"],["2024-09-18T14:33:57Z"]],"container":"<table class=\"white-space: nowrap\">\n  <thead>\n    <tr>\n      <th>path<\/th>\n      <th>type<\/th>\n      <th>size<\/th>\n      <th>permissions<\/th>\n      <th>modification_time<\/th>\n      <th>user<\/th>\n      <th>group<\/th>\n      <th>device_id<\/th>\n      <th>hard_links<\/th>\n      <th>special_device_id<\/th>\n      <th>inode<\/th>\n      <th>block_size<\/th>\n      <th>blocks<\/th>\n      <th>flags<\/th>\n      <th>generation<\/th>\n      <th>access_time<\/th>\n      <th>change_time<\/th>\n      <th>birth_time<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"pageLength":5,"scrollX":true,"columnDefs":[{"className":"dt-right","targets":[2,3,7,8,9,10,11,12,13,14]},{"name":"path","targets":0},{"name":"type","targets":1},{"name":"size","targets":2},{"name":"permissions","targets":3},{"name":"modification_time","targets":4},{"name":"user","targets":5},{"name":"group","targets":6},{"name":"device_id","targets":7},{"name":"hard_links","targets":8},{"name":"special_device_id","targets":9},{"name":"inode","targets":10},{"name":"block_size","targets":11},{"name":"blocks","targets":12},{"name":"flags","targets":13},{"name":"generation","targets":14},{"name":"access_time","targets":15},{"name":"change_time","targets":16},{"name":"birth_time","targets":17}],"order":[],"autoWidth":false,"orderClasses":false,"lengthMenu":[5,10,25,50,100]}},"evals":[],"jsHooks":[]}</script>
 </div>
 </div>
 <p>Aquí usamos <code>$</code> para indexar el resultado y devolver sólo el valor de <code>modification_time</code>.</p>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb10"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a><span class="fu">file_info</span>(<span class="fu">here</span>(<span class="st">"data"</span>, <span class="st">"case_linelists"</span>, <span class="st">"linelist_cleaned.rds"</span>))<span class="sc">$</span>modification_time</span></code><button title="Copiar al portapapeles" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code>[1] "2024-09-18 17:39:56 +07"</code></pre>
+<pre><code>[1] "2024-09-18 21:38:02 +07"</code></pre>
 </div>
 </div>
 </section><section id="check-if-exists" class="level2" data-number="45.4"><h2 data-number="45.4" class="anchored" data-anchor-id="check-if-exists">
@@ -1008,7 +1007,7 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 <div class="cell">
 <div class="sourceCode cell-code" id="cb18"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb18-1"><a href="#cb18-1" aria-hidden="true" tabindex="-1"></a><span class="fu">is_dir</span>(<span class="fu">here</span>(<span class="st">"data"</span>))</span></code><button title="Copiar al portapapeles" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data 
+<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data 
                                                                                   TRUE </code></pre>
 </div>
 </div>
@@ -1018,7 +1017,7 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 <div class="cell">
 <div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a><span class="fu">is_file</span>(<span class="fu">here</span>(<span class="st">"data"</span>, <span class="st">"case_linelists"</span>, <span class="st">"linelist_cleaned.rds"</span>))</span></code><button title="Copiar al portapapeles" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
-<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c610d5ee4/epiRhandbook_eng/data/case_linelists/linelist_cleaned.rds 
+<pre><code>C:/Users/ngulu864/AppData/Local/Temp/RtmpQXbGPz/file917c48b2464c/epiRhandbook_eng/data/case_linelists/linelist_cleaned.rds 
                                                                                                                       TRUE </code></pre>
 </div>
 </div>
@@ -1701,7 +1700,7 @@ <h1 class="title"><span id="directory-interactions" class="quarto-section-identi
 
     </div>
   </div>
-</footer><script>var lightboxQuarto = GLightbox({"openEffect":"zoom","descPosition":"bottom","loop":false,"closeEffect":"zoom","selector":".lightbox"});
+</footer><script>var lightboxQuarto = GLightbox({"closeEffect":"zoom","selector":".lightbox","descPosition":"bottom","loop":false,"openEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

diff --git a/html_outputs/es/new_pages/editorial_style.es.html b/html_outputs/es/new_pages/editorial_style.es.html
@@ -290,7 +290,6 @@
 <a class="dropdown-item" href="/pt/new_pages/editorial_style.pt.html" id="language-link-pt">Português</a>
 <a class="dropdown-item" href="/tr/new_pages/editorial_style.tr.html" id="language-link-tr">Türkçe</a>
 <a class="dropdown-item" href="/ru/new_pages/editorial_style.ru.html" id="language-link-ru">Русский</a>
-<a class="dropdown-item" href="/ar/new_pages/editorial_style.ar.html" id="language-link-ar">write something</a>
 </ul>
 </div>
 <div class="sidebar-menu-container">