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  1. openfold openfold Public

    Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

    Python 2.8k 530

  2. genie2 genie2 Public

    Protein structure diffusion model for unconditional protein generation and motif scaffolding

    Python 119 18

  3. genie genie Public

    De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

    Python 166 20

  4. rgn2 rgn2 Public

    Python 101 29

  5. proteinnet proteinnet Public

    Standardized data set for machine learning of protein structure

    Python 857 132

  6. hsm hsm Public

    Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    Jupyter Notebook 69 21

Repositories

Showing 10 of 14 repositories
  • QuickBind Public

    A Light-Weight And Interpretable Molecular Docking Model

    aqlaboratory/QuickBind’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Oct 23, 2024
  • ring-flash-attention Public Forked from zhuzilin/ring-flash-attention

    Ring attention implementation with flash attention

    aqlaboratory/ring-flash-attention’s past year of commit activity
    Python 0 MIT 45 0 0 Updated Oct 21, 2024
  • openfold Public

    Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

    aqlaboratory/openfold’s past year of commit activity
    Python 2,764 Apache-2.0 530 174 (3 issues need help) 18 Updated Jul 23, 2024
  • insilico_design_pipeline Public

    In-silico design pipeline for evaluating protein structure diffusion models.

    aqlaboratory/insilico_design_pipeline’s past year of commit activity
    Python 16 Apache-2.0 3 0 0 Updated Jun 25, 2024
  • genie2 Public

    Protein structure diffusion model for unconditional protein generation and motif scaffolding

    aqlaboratory/genie2’s past year of commit activity
    Python 119 Apache-2.0 18 4 1 Updated Jun 24, 2024
  • hsm Public

    Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    aqlaboratory/hsm’s past year of commit activity
    Jupyter Notebook 69 MIT 21 2 1 Updated Apr 26, 2024
  • genie Public

    De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

    aqlaboratory/genie’s past year of commit activity
    Python 166 Apache-2.0 20 1 1 Updated Apr 21, 2024
  • rgn2 Public
    aqlaboratory/rgn2’s past year of commit activity
    Python 101 29 3 1 Updated Nov 28, 2023
  • proteinnet Public

    Standardized data set for machine learning of protein structure

    aqlaboratory/proteinnet’s past year of commit activity
    Python 857 MIT 132 16 0 Updated Nov 18, 2020
  • hsm-web Public

    Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

    aqlaboratory/hsm-web’s past year of commit activity
    HTML 7 MIT 3 0 0 Updated Jan 8, 2020

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