Changed the conda tool used in the dockerfile

[itutu-tienday]

Content

Changed the conda tool used in the dockerfile from miniconda to miniforge

• Purpose:
  • Countermeasure for caiman's conda environment construction error
  • Speed up conda command operation

Testcase

• docker on macos (15)
  • build docker image
  • run workflow
    • caiman
    • suite2p
• docker on ubuntu (22)
  • build docker image
  • run workflow
    • caiman
    • suite2p

[milesAraya]

docker on macos

• build docker image
  run workflow
  • caiman
  • suite2p

 git checkout feature/dockerfile-conda-tool-update
  docker compose -f docker-compose.dev.yml up  

WARN[0000] /Users/milesd/GitRepos/barebone-studio/docker-compose.dev.yml: the attribute version is obsolete, it will be ignored, please remove it to avoid potential confusion
[+] Running 5/5
✔ studio-dev-fe Pulled 28.5s
✔ 579b34f0a95b Download complete 1.6s
✔ 4927cb899c33 Download complete 1.6s
✔ 2a2799ae89a2 Download complete 3.5s
✔ 7b3f8039e3c4 Download complete 18.5s
[+] Building 590.2s (18/18) FINISHED docker-container:amd64-builder
=> [studio-dev-be internal] load build definition from Dockerfile.dev 0.0s
=> => transferring dockerfile: 1.52kB 0.0s
=> WARN: FromPlatformFlagConstDisallowed: FROM --platform flag should not use constant value "linux/amd64" (line 1) 0.0s
=> [studio-dev-be internal] load metadata for docker.io/library/python:3.8.20-slim 3.1s
=> [studio-dev-be internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [studio-dev-be 1/11] FROM docker.io/library/python:3.8.20-slim@sha256:1d52838af602b4b5a831beb13a0e4d073280665ea7be7f69ce2382f29c5a613f 0.0s
=> => resolve docker.io/library/python:3.8.20-slim@sha256:1d52838af602b4b5a831beb13a0e4d073280665ea7be7f69ce2382f29c5a613f 0.0s
=> [studio-dev-be internal] load build context 0.2s
=> => transferring context: 282.52kB 0.2s
=> CACHED [studio-dev-be 2/11] WORKDIR /app 0.0s
=> CACHED [studio-dev-be 3/11] RUN apt-get --allow-releaseinfo-change update && apt-get install --no-install-recommends -y sudo procps iproute2 iputils 0.0s
=> [studio-dev-be 4/11] RUN apt-get install --no-install-recommends -y gcc g++ libgl1 libgl1-mesa-dev libopencv-dev && apt-get autoremove -y && apt-g 202.5s
=> [studio-dev-be 5/11] RUN mkdir -p /opt/miniforge && curl -L "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname) 101.3s
=> [studio-dev-be 6/11] RUN echo 'alias ll="ls -la --color=auto"' >> /root/.bashrc && echo 'set nu ic hls nowrap ts=4 sw=4 | syntax on' >> /root/.vimrc 0.4s
=> [studio-dev-be 7/11] COPY pyproject.toml poetry.lock ./ 0.0s
=> [studio-dev-be 8/11] RUN pip3 install --no-cache-dir --upgrade pip && pip3 install poetry && poetry config virtualenvs.create false 41.9s
=> [studio-dev-be 9/11] RUN poetry install --no-root --with dev 85.9s
=> [studio-dev-be 10/11] COPY studio/app/optinist/wrappers/caiman/run_download_model_files.sh ./ 0.3s
=> [studio-dev-be 11/11] RUN bash run_download_model_files.sh && rm run_download_model_files.sh 49.9s
=> [studio-dev-be] exporting to oci image format 104.5s
=> => exporting layers 69.7s
=> => exporting manifest sha256:cad3614d2f4a4ef4d243f4588a99d9472b38800f60485d353df09284aa996bdd 0.0s
=> => exporting config sha256:e84b05eb8b00b9656185cf8d01efae95a168294b63c4d86aab844efbd3d12f41 0.0s
=> => sending tarball 34.8s
=> [studio-dev-be] importing to docker 0.0s
=> [studio-dev-be] resolving provenance for metadata file 0.0s
[+] Running 3/3
✔ Network barebone-studio_default Created0.1s iner barebone-studio-studio-dev-be-1 Creating 42.4s
⠼ Container barebone-studio-studio-dev-be-1 Crea[+] Running 4/4
✔ Network barebone-studio_default Created0.1s
✔ Container barebone-studio-studio-dev-be-1 Created42.5s
✔ Container barebone-studio-studio-dev-fe-1 Created0.2s
! studio-dev-be The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested 0.0s
Attaching to studio-dev-be-1, studio-dev-fe-1
studio-dev-fe-1 | yarn install v1.22.19
studio-dev-fe-1 | [1/5] Validating package.json...
studio-dev-fe-1 | [2/5] Resolving packages...
studio-dev-fe-1 | [3/5] Fetching packages...
studio-dev-be-1 | Skipping virtualenv creation, as specified in config file.
studio-dev-be-1 | 2024-12-05 14:04:08,833 INFO: [uvicorn.error] init():339 - Will watch for changes in these directories: ['/app/studio']
studio-dev-be-1 | 2024-12-05 14:04:08,890 INFO: [uvicorn.error] bind_socket():571 - Uvicorn running on http://0.0.0.0:8000 (Press CTRL+C to quit)
studio-dev-be-1 | 2024-12-05 14:04:08,893 INFO: [uvicorn.error] startup():77 - Started reloader process [1] using StatReload
studio-dev-be-1 | 2024-12-05 14:04:28,514 INFO: [uvicorn.error] serve():76 - Started server process [27]
studio-dev-be-1 | 2024-12-05 14:04:28,517 INFO: [uvicorn.error] startup():46 - Waiting for application startup.
studio-dev-be-1 | 2024-12-05 14:04:28,560 INFO: [optinist] lifespan():44 - "Studio" application startup complete. [mode: multiuser]
studio-dev-be-1 | 2024-12-05 14:04:28,563 INFO: [uvicorn.error] startup():60 - Application startup complete.
studio-dev-fe-1 | [4/5] Linking dependencies...
studio-dev-fe-1 | warning " > @mui/x-data-grid@6.20.4" has unmet peer dependency "@mui/system@^5.4.1".
studio-dev-fe-1 | warning " > @mui/x-tree-view@6.17.0" has unmet peer dependency "@mui/system@^5.8.0".
studio-dev-fe-1 | warning " > @testing-library/user-event@14.5.2" has unmet peer dependency "@testing-library/dom@>=7.21.4".
studio-dev-fe-1 | warning "notistack > goober@2.1.16" has unmet peer dependency "csstype@^3.0.10".
studio-dev-fe-1 | warning "plotly.js > style-loader@4.0.0" has unmet peer dependency "webpack@^5.27.0".
studio-dev-fe-1 | warning "plotly.js > @plotly/mapbox-gl > @mapbox/mapbox-gl-supported@1.5.0" has unmet peer dependency "mapbox-gl@>=0.32.1 <2.0.0".
studio-dev-fe-1 | warning " > react-plotlyjs-ts@2.2.2" has incorrect peer dependency "plotly.js@^1.31.2".
studio-dev-fe-1 | warning " > react-plotlyjs-ts@2.2.2" has incorrect peer dependency "react@^16.0.0".
studio-dev-fe-1 | warning " > react-plotlyjs-ts@2.2.2" has incorrect peer dependency "react-dom@^16.0.0".
studio-dev-fe-1 | warning " > react-plotlyjs-ts@2.2.2" has incorrect peer dependency "typescript@^2.5.3".
studio-dev-fe-1 | warning "react-scripts > eslint-config-react-app > eslint-plugin-flowtype@8.0.3" has unmet peer dependency "@babel/plugin-syntax-flow@^7.14.5".
studio-dev-fe-1 | warning "react-scripts > eslint-config-react-app > eslint-plugin-flowtype@8.0.3" has unmet peer dependency "@babel/plugin-transform-react-jsx@^7.14.9".
studio-dev-fe-1 | warning " > redux-mock-store@1.5.5" has unmet peer dependency "redux@*".
studio-dev-fe-1 | [5/5] Building fresh packages...
studio-dev-fe-1 | $ cd .. && husky install frontend/.husky && chmod ug+x frontend/.husky/pre-commit
studio-dev-fe-1 | husky - git command not found, skipping install
studio-dev-fe-1 | Done in 520.23s.
studio-dev-fe-1 | yarn run v1.22.19
studio-dev-fe-1 | $ node export-versions.js
studio-dev-fe-1 | $ react-app-rewired start --scripts-version react-scripts
studio-dev-fe-1 | (node:1617) [DEP_WEBPACK_DEV_SERVER_ON_AFTER_SETUP_MIDDLEWARE] DeprecationWarning: 'onAfterSetupMiddleware' option is deprecated. Please use the 'setupMiddlewares' option.
studio-dev-fe-1 | (Use node --trace-deprecation ... to show where the warning was created)
studio-dev-fe-1 | (node:1617) [DEP_WEBPACK_DEV_SERVER_ON_BEFORE_SETUP_MIDDLEWARE] DeprecationWarning: 'onBeforeSetupMiddleware' option is deprecated. Please use the 'setupMiddlewares' option.
studio-dev-fe-1 | Starting the development server...
studio-dev-fe-1 |
studio-dev-fe-1 | Compiled with warnings.
studio-dev-fe-1 |
studio-dev-fe-1 | Failed to parse source map from '/app/frontend/node_modules/@plotly/mapbox-gl/dist/mapbox-gl-unminified.js.map' file: Error: ENOENT: no such file or directory, open '/app/frontend/node_modules/@plotly/mapbox-gl/dist/mapbox-gl-unminified.js.map'
studio-dev-fe-1 |
studio-dev-fe-1 | Search for the keywords to learn more about each warning.
studio-dev-fe-1 | To ignore, add // eslint-disable-next-line to the line before.
studio-dev-fe-1 |
studio-dev-fe-1 | WARNING in ./node_modules/@plotly/mapbox-gl/dist/mapbox-gl-unminified.js
studio-dev-fe-1 | Module Warning (from ./node_modules/source-map-loader/dist/cjs.js):
studio-dev-fe-1 | Failed to parse source map from '/app/frontend/node_modules/@plotly/mapbox-gl/dist/mapbox-gl-unminified.js.map' file: Error: ENOENT: no such file or directory, open '/app/frontend/node_modules/@plotly/mapbox-gl/dist/mapbox-gl-unminified.js.map'
studio-dev-fe-1 |
studio-dev-fe-1 | webpack compiled with 1 warning
studio-dev-fe-1 | No issues found.