Code

SDE#1884

Code

Merged

boeschf merged 96 commits intoarbor-sim:masterarbor-sim/arbor:masterfrom boeschf:SDEboeschf/arbor:SDECopy head branch name to clipboardOct 5, 2022

+2,830-122

Commits

Commits on Apr 15, 2022

• cpu

  boeschf

  committed
  0060463

  Copy full SHA for 0060463

Commits on May 2, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  dc12fda

  Copy full SHA for dc12fda

• missing include

  boeschf

  committed
  aa07ab4

  Copy full SHA for aa07ab4

Commits on May 3, 2022

• simplified API calls

  boeschf

  committed
  687a4c6

  Copy full SHA for 687a4c6

Commits on May 18, 2022

• better random numbers

  boeschf

  committed
  263dd86

  Copy full SHA for 263dd86

Commits on May 26, 2022

• size_type, rand, coalesce

  boeschf

  committed
  e9a3255

  Copy full SHA for e9a3255

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  b46d459

  Copy full SHA for b46d459

• fixes after merge

  boeschf

  committed
  8071f79

  Copy full SHA for 8071f79

• removed comment

  boeschf

  committed
  5aeb5cd

  Copy full SHA for 5aeb5cd

• removed printouts

  boeschf

  committed
  1e3518b

  Copy full SHA for 1e3518b

• seed now settable via overrides

  boeschf

  committed
  1b66a60

  Copy full SHA for 1b66a60

Commits on Jul 12, 2022

• moved random number generation from modcc to backend

  boeschf

  committed
  71ddbda

  Copy full SHA for 71ddbda

• cosmetics

  boeschf

  committed
  8a7e2bc

  Copy full SHA for 8a7e2bc

• moved random123 out of the way

  boeschf

  committed
  4e05517

  Copy full SHA for 4e05517

• Merge remote-tracking branch 'upstream/master' into SDE_backend

  boeschf

  committed
  ae99b0f

  Copy full SHA for ae99b0f

• cleanup

  boeschf

  committed
  d990f77

  Copy full SHA for d990f77

• cleanup

  boeschf

  committed
  93e5d66

  Copy full SHA for 93e5d66

• cleanup

  boeschf

  committed
  d1ecd6c

  Copy full SHA for d1ecd6c

• cleanup

  boeschf

  committed
  4930f83

  Copy full SHA for 4930f83

• simd printer

  boeschf

  committed
  ccc55f7

  Copy full SHA for ccc55f7

• export backtrace

  boeschf

  committed
  26ff30e

  Copy full SHA for 26ff30e

• backtrace

  boeschf

  committed
  214f0d0

  Copy full SHA for 214f0d0

Commits on Jul 13, 2022

• storage

  boeschf

  committed
  1876136

  Copy full SHA for 1876136

• gpu backend

  boeschf

  committed
  9e7d194

  Copy full SHA for 9e7d194

• gpu printer

  boeschf

  committed
  be25475

  Copy full SHA for be25475

Commits on Jul 14, 2022

• documentation

  boeschf

  committed
  ec7e609

  Copy full SHA for ec7e609

Commits on Jul 15, 2022

• review low hanging fruit

  boeschf

  committed
  51832fc

  Copy full SHA for 51832fc

Commits on Jul 17, 2022

• removed stochastic flag

  boeschf

  committed
  ca98b1c

  Copy full SHA for ca98b1c

• added global seed via recipe, removed per-mechanism seed

  boeschf

  committed
  2103820

  Copy full SHA for 2103820

Commits on Jul 18, 2022

• more detailed comments

  boeschf

  committed
  2fbaf04

  Copy full SHA for 2fbaf04

Commits on Jul 19, 2022

• seed initialization

  boeschf

  committed
  52996d8

  Copy full SHA for 52996d8

• seed initialization documentation

  boeschf

  committed
  0824a96

  Copy full SHA for 0824a96

Commits on Jul 20, 2022

• removed blank lines

  boeschf

  committed
  5d141aa

  Copy full SHA for 5d141aa

Commits on Aug 2, 2022

• Update doc/concepts/mechanisms.rst

  Show description for e52745d
  

  boeschf

  and

  brenthuisman

  authored
  e52745d

  Copy full SHA for e52745d

• Update doc/concepts/mechanisms.rst

  Show description for f06979d
  

  boeschf

  and

  brenthuisman

  authored
  f06979d

  Copy full SHA for f06979d

• Update doc/cpp/simulation.rst

  Show description for 1443dc5
  

  boeschf

  and

  brenthuisman

  authored
  1443dc5

  Copy full SHA for 1443dc5

• Update doc/fileformat/nmodl.rst

  Show description for ac3871c
  

  boeschf

  and

  brenthuisman

  authored
  ac3871c

  Copy full SHA for ac3871c

• link to wikipedia for Ito calculus

  boeschf

  committed
  a07fd85

  Copy full SHA for a07fd85

Commits on Aug 9, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  b36b885

  Copy full SHA for b36b885

Commits on Aug 10, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  0edcfd7

  Copy full SHA for 0edcfd7

Commits on Aug 29, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  064b698

  Copy full SHA for 064b698

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  256a272

  Copy full SHA for 256a272

• modcc tests

  boeschf

  committed
  d2c5bf6

  Copy full SHA for d2c5bf6

• simulation builder test

  boeschf

  committed
  c0555ed

  Copy full SHA for c0555ed

• simulation builder test

  boeschf

  committed
  7bd20a4

  Copy full SHA for 7bd20a4

Commits on Aug 30, 2022

• easier random values extraction with probes

  boeschf

  committed
  40428c9

  Copy full SHA for 40428c9

• python probes

  boeschf

  committed
  3cdca99

  Copy full SHA for 3cdca99

Commits on Sep 2, 2022

• extensive tests for random numbers

  boeschf

  committed
  426eef0

  Copy full SHA for 426eef0

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  479af5f

  Copy full SHA for 479af5f

• typo

  boeschf

  committed
  c860f4d

  Copy full SHA for c860f4d

Commits on Sep 5, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  db4bd21

  Copy full SHA for db4bd21

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  b912862

  Copy full SHA for b912862

Commits on Sep 6, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  9534a50

  Copy full SHA for 9534a50

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  3fc3238

  Copy full SHA for 3fc3238

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  91b0e1f

  Copy full SHA for 91b0e1f

• remove warning: comparison to unsigned

  boeschf

  committed
  913ec2a

  Copy full SHA for 913ec2a

Commits on Sep 13, 2022

• review part 1

  boeschf

  committed
  432e02d

  Copy full SHA for 432e02d

• review part 2

  boeschf

  committed
  66f9e12

  Copy full SHA for 66f9e12

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  43cd610

  Copy full SHA for 43cd610

• minor cosmentic fixes

  boeschf

  committed
  addcd4e

  Copy full SHA for addcd4e

• doc updates

  boeschf

  committed
  42864b0

  Copy full SHA for 42864b0

• simplifed calling rng

  boeschf

  committed
  c7aa1b3

  Copy full SHA for c7aa1b3

• simplified gpu shared state rng

  boeschf

  committed
  3aedb37

  Copy full SHA for 3aedb37

• bump abi version

  boeschf

  committed
  67dddc9

  Copy full SHA for 67dddc9

• fix some sphinx errors

  boeschf

  committed
  79fc2e8

  Copy full SHA for 79fc2e8

• dev docs

  boeschf

  committed
  8bc054c

  Copy full SHA for 8bc054c

Commits on Sep 15, 2022

• typo

  boeschf

  committed
  e0699a7

  Copy full SHA for e0699a7

• different solver test

  boeschf

  committed
  d605697

  Copy full SHA for d605697

• coupled SDE

  boeschf

  committed
  2c3b0ec

  Copy full SHA for 2c3b0ec

Commits on Sep 19, 2022

• small doc updates

  boeschf

  committed
  1d54ca8

  Copy full SHA for 1d54ca8

Commits on Sep 26, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  093c9a0

  Copy full SHA for 093c9a0

• dev doc update

  boeschf

  committed
  44b16d9

  Copy full SHA for 44b16d9

• typo

  boeschf

  committed
  6786464

  Copy full SHA for 6786464

• changed weird indentation

  boeschf

  committed
  c2fbfb7

  Copy full SHA for c2fbfb7

• remove unnecessary move

  boeschf

  committed
  6c82d04

  Copy full SHA for 6c82d04

• test with static gtest

  boeschf

  committed
  be7a883

  Copy full SHA for be7a883

Commits on Sep 27, 2022

• gpu fix

  boeschf

  committed
  a033740

  Copy full SHA for a033740

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  fa7b7be

  Copy full SHA for fa7b7be

• Merge branch 'SDE' into SDE_gpu_fix

  boeschf

  committed
  133dc16

  Copy full SHA for 133dc16

• guard against multiple defines

  boeschf

  committed
  c00466a

  Copy full SHA for c00466a

• padding for gpu indices

  boeschf

  committed
  9846fec

  Copy full SHA for 9846fec

Commits on Sep 28, 2022

• gpu and flag for not using random number generation on gpus

  boeschf

  committed
  7bada96

  Copy full SHA for 7bada96

• fill empty fields in rng with default values different from zero

  boeschf

  committed
  13335a0

  Copy full SHA for 13335a0

Commits on Sep 29, 2022

• use aligned memory (width_padded) and add better compile time flags

  boeschf

  committed
  f308b33

  Copy full SHA for f308b33

• add restrict keyword

  boeschf

  committed
  dea964e

  Copy full SHA for dea964e

• test printouts

  boeschf

  committed
  b39c06d

  Copy full SHA for b39c06d

• Merge remote-tracking branch 'origin/SDE' into SDE_gpu_fix

  boeschf

  committed
  9e09b09

  Copy full SHA for 9e09b09

• removed printouts

  boeschf

  committed
  0696b4e

  Copy full SHA for 0696b4e

• Merge pull request #1 from boeschf/SDE_gpu_fix

  Show description for c881fb0
  boeschf

  authored
  c881fb0

  Copy full SHA for c881fb0

• fixed value_width_padded for simd

  boeschf

  committed
  f914b51

  Copy full SHA for f914b51

Commits on Oct 4, 2022

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  811eab0

  Copy full SHA for 811eab0

• gpu: delegated random number generation to pimpl

  boeschf

  committed
  4a7547e

  Copy full SHA for 4a7547e

• forgot include

  boeschf

  committed
  d73eea2

  Copy full SHA for d73eea2

• Merge remote-tracking branch 'upstream/master' into SDE

  boeschf

  committed
  c305b73

  Copy full SHA for c305b73

• fix cable solver

  boeschf

  committed
  ac87eef

  Copy full SHA for ac87eef

• white space

  boeschf

  committed
  ccb18c9

  Copy full SHA for ccb18c9