fix(test_connexion) install ping

Dockerfile

@@ -1,27 +1,38 @@
-FROM jruby:9.2.17.0-jdk11 as build-image
+FROM jruby:9.2.18.0-jdk11 as build-image
 
 RUN apt-get update \
     && apt-get upgrade -y \
     && apt-get install -y build-essential npm \
+    && apt-get install -y iputils-ping \
     && apt-get autoremove --purge -y \
     && apt-get clean -y \
     && rm -rf /var/lib/apt/lists/*
 
+
 RUN gem install jekyll
 
 RUN npm install -g fsh-sushi
 
 WORKDIR /build
 
-COPY . .
+COPY _updatePublisher_curl.sh _updatePublisher_curl.sh
+COPY _genonce.sh _genonce.sh
+COPY input input
+COPY ig.ini ig.ini
+COPY sushi-config.yaml sushi-config.yaml
+COPY package-list.json package-list.json
 
-RUN ./_updatePublisher.sh -y || echo "ok"
+RUN ./_updatePublisher_curl.sh -y || echo "ok"
 
 RUN ./_genonce.sh -y
 
-FROM scratch
+FROM alpine:3.13
+
+WORKDIR /app
+
+COPY docker-entrypoint.sh /app/docker-entrypoint.sh
+RUN chmod +x /app/docker-entrypoint.sh
 
 COPY --from=build-image /build /app
-COPY --from=build-image /bin/sh /bin/sh
 
-CMD /bin/sh
+ENTRYPOINT ["/app/docker-entrypoint.sh"]

_updatePublisher_curl.sh

@@ -0,0 +1,133 @@
+#!/bin/bash
+pubsource=https://github.com/HL7/fhir-ig-publisher/releases/latest/download/
+publisher_jar=publisher.jar
+dlurl=$pubsource$publisher_jar
+
+input_cache_path=$PWD/input-cache/
+
+scriptdlroot=https://raw.githubusercontent.com/HL7/ig-publisher-scripts/main
+update_bat_url=$scriptdlroot/_updatePublisher.bat
+gen_bat_url=$scriptdlroot/_genonce.bat
+gencont_bat_url=$scriptdlroot/_gencontinuous.bat
+gencont_sh_url=$scriptdlroot/_gencontinuous.sh
+gen_sh_url=$scriptdlroot/_genonce.sh
+update_sh_url=$scriptdlroot/_updatePublisher.sh
+
+skipPrompts=false
+FORCE=false
+
+if ! type "curl" > /dev/null; then
+	echo "ERROR: Script needs curl to download latest IG Publisher. Please install curl."
+	exit 1
+fi
+
+while [ "$#" -gt 0 ]; do
+    case $1 in
+    -f|--force)  FORCE=true ;;
+    -y|--yes)  skipPrompts=true ; FORCE=true ;;
+    *)  echo "Unknown parameter passed: $1.  Exiting"; exit 1 ;;
+    esac
+    shift
+done
+
+echo "Checking internet connection"
+case "$OSTYPE" in
+  linux-gnu* ) curl -sSf tx.fhir.org > /dev/null ;;
+  darwin* )	ping tx.fhir.org -c 1 >/dev/null ;;
+	*) echo "unknown: $OSTYPE"; exit 1 ;;
+esac
+
+if [ $? -ne 0 ] ; then
+  echo "Offline (or the terminology server is down), unable to update.  Exiting"
+  exit 1
+fi
+
+if [ ! -d "$input_cache_path" ] ; then
+  if [ $FORCE != true ]; then
+    echo "$input_cache_path does not exist"
+    message="create it?"
+    read -r -p "$message" response
+    else
+    response=y
+  fi
+fi
+
+if [[ $response =~ ^[yY].*$ ]] ; then
+  mkdir ./input-cache
+fi
+
+publisher="$input_cache_path$publisher_jar"
+
+if test -f "$publisher" ; then
+	echo "IG Publisher FOUND in input-cache"
+	jarlocation="$publisher"
+	jarlocationname="Input Cache"
+	upgrade=true
+else
+	publisher="../$publisher_jar"
+	upgrade=true
+	if test -f "$publisher"; then
+		echo "IG Publisher FOUND in parent folder"
+		jarlocation="$publisher"
+		jarlocationname="Parent Folder"
+		upgrade=true
+	else
+		echo "IG Publisher NOT FOUND in input-cache or parent folder"
+		jarlocation=$input_cache_path$publisher_jar
+		jarlocationname="Input Cache"
+		upgrade=false
+	fi
+fi
+
+if [[ $skipPrompts == false ]]; then
+
+  if [[ $upgrade == true ]]; then
+    message="Overwrite $jarlocation? (Y/N) "
+  else
+    echo Will place publisher jar here: "$jarlocation"
+    message="Ok (enter 'y' or 'Y' to continue, any other key to cancel)?"
+  fi
+  read -r -p "$message" response
+else
+  response=y
+fi
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+
+	echo "Downloading most recent publisher to $jarlocationname - it's ~100 MB, so this may take a bit"
+	curl -L $dlurl -o "$jarlocation" --create-dirs
+else
+	echo cancelled publisher update
+fi
+
+if [[ $skipPrompts != true ]]; then
+    message="Update scripts? (enter 'y' or 'Y' to continue, any other key to cancel)?"
+    read -r -p "$message" response
+  fi
+
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+  echo "Downloading most recent scripts "
+
+  curl -L $update_bat_url -o /tmp/_updatePublisher.new
+  cp /tmp/_updatePublisher.new _updatePublisher.bat
+  rm /tmp/_updatePublisher.new
+
+  curl -L $gen_bat_url -o /tmp/_genonce.new
+  cp /tmp/_genonce.new _genonce.bat
+  rm /tmp/_genonce.new
+
+  curl -L $gencont_bat_url -o /tmp/_gencontinuous.new
+  cp /tmp/_gencontinuous.new _gencontinuous.bat
+  rm /tmp/_gencontinuous.new
+
+  curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
+  cp /tmp/_gencontinuous.new _gencontinuous.sh
+  rm /tmp/_gencontinuous.new
+
+  curl -L $gen_sh_url -o /tmp/_genonce.new
+  cp /tmp/_genonce.new _genonce.sh
+  rm  /tmp/_genonce.new
+
+  curl -L $update_sh_url -o /tmp/_updatePublisher.new
+  cp /tmp/_updatePublisher.new _updatePublisher.sh
+  rm /tmp/_updatePublisher.new
+fi

docker-entrypoint.sh

@@ -0,0 +1,11 @@
+#!/bin/sh
+
+# Exit immediately if a command exits with a non-zero status.
+set -e
+
+# Trace execution
+[[ "${DEBUG}" ]] && set -x
+
+export STATIC_ROOT="${STATIC_ROOT:-/var/www/static/cohort360-ig}"
+
+rm -rf "${STATIC_ROOT}" && cp -r ./output "${STATIC_ROOT}"