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  1. cy2path cy2path Public

    Factorial latent dynamic models trained on Markovian simulations of biological processes using single cell RNA sequencing data.

    Python 2

  2. cytopath cytopath Public

    Simulation based inference of differentiation trajectories from RNA velocity fields.

    Python 10 4

  3. insilico_sequence_design insilico_sequence_design Public

    Moduating gene expression via in-silico mutagenesis

    Python 1

  4. EngreitzLab/gene_network_evaluation EngreitzLab/gene_network_evaluation Public

    Evaluation framework for computationally inferred gene networks from single-cell data.

    Jupyter Notebook 9 7