1.2.0 Release PR (#6)

* Pre 1.2.0 push * Add artic-inrb-mpox schemes to repository
artic-network · Nov 11, 2024 · 3a10c3e · 3a10c3e
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diff --git a/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/README.md b/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/README.md
@@ -0,0 +1,60 @@
+# artic-inrb-mpox 2500bp v1.0.0-cladeia
+
+[primalscheme labs](https://labs.primalscheme.com/detail/artic-inrb-mpox/2500/v1.0.0-cladeia)
+
+## Description
+
+Clade I genomes were aligned to clade I reference and Clade II genomes were aligned to clade II reference with squirrel. The two clades were consensus aligned using MAFFT and the alignment was used as the input for primalscheme3. BED files for each clade using primalbedtools
+
+## Overviews
+
+## Details
+
+```json
+{
+    "ampliconsize": 2500,
+    "schemeversion": "v1.0.0-cladeia",
+    "schemename": "artic-inrb-mpox",
+    "primer_bed_md5": "41dd2e95cbe2bda6be8556dd118c84fe",
+    "reference_fasta_md5": "7ca540c38981c844710721e5165d2b77",
+    "status": "draft",
+    "citations": [],
+    "authors": [
+        "ARTIC network",
+        "INRB",
+        "Quick Lab"
+    ],
+    "algorithmversion": "primalscheme3",
+    "species": [
+        10244
+    ],
+    "license": "CC BY-SA 4.0",
+    "primerclass": "primerschemes",
+    "infoschema": "v2.1.0",
+    "articbedversion": "v3.0",
+    "collections": [
+        "QUICK-LAB",
+        "WHOLE-GENOME",
+        "ARTIC"
+    ],
+    "links": {
+        "protocols": [],
+        "validation": [],
+        "homepage": [],
+        "vendors": [],
+        "misc": []
+    },
+    "refselect": null,
+    "description": "Clade I genomes were aligned to clade I reference and Clade II genomes were aligned to clade II reference with squirrel. The two clades were consensus aligned using MAFFT and the alignment was used as the input for primalscheme3. BED files for each clade using primalbedtools",
+    "derivedfrom": null,
+    "contactinfo": null
+}
+```
+
+
+
+------------------------------------------------------------------------
+
+This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) 
+
+![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)
diff --git a/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/info.json b/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/info.json
@@ -0,0 +1,38 @@
+{
+    "ampliconsize": 2500,
+    "schemeversion": "v1.0.0-cladeia",
+    "schemename": "artic-inrb-mpox",
+    "primer_bed_md5": "41dd2e95cbe2bda6be8556dd118c84fe",
+    "reference_fasta_md5": "7ca540c38981c844710721e5165d2b77",
+    "status": "draft",
+    "citations": [],
+    "authors": [
+        "ARTIC network",
+        "INRB",
+        "Quick Lab"
+    ],
+    "algorithmversion": "primalscheme3",
+    "species": [
+        10244
+    ],
+    "license": "CC BY-SA 4.0",
+    "primerclass": "primerschemes",
+    "infoschema": "v2.1.0",
+    "articbedversion": "v3.0",
+    "collections": [
+        "QUICK-LAB",
+        "WHOLE-GENOME",
+        "ARTIC"
+    ],
+    "links": {
+        "protocols": [],
+        "validation": [],
+        "homepage": [],
+        "vendors": [],
+        "misc": []
+    },
+    "refselect": null,
+    "description": "Clade I genomes were aligned to clade I reference and Clade II genomes were aligned to clade II reference with squirrel. The two clades were consensus aligned using MAFFT and the alignment was used as the input for primalscheme3. BED files for each clade using primalbedtools",
+    "derivedfrom": null,
+    "contactinfo": null
+}
diff --git a/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/primer.bed b/data/primer_schemes/MPXV/artic-inrb-mpox/v1.0.0-cladeia/primer.bed
@@ -0,0 +1,148 @@
+#artic-bed-version v3.0
+KJ642613.1_masked	133	158	2o0fvmwf_1_LEFT_1	1	+	   CGTGAGTAGTGTCCCCTACATGGAT
+KJ642613.1_masked	136	158	2o0fvmwf_1_LEFT_2	1	+	   GAGCAGTGTCCCCTACATGGAT
+KJ642613.1_masked	135	158	2o0fvmwf_1_LEFT_3	1	+	   TGAGCAGTGTTCCCTACATGGAT
+KJ642613.1_masked	2749	2780	359ba5b8_1_RIGHT_1	1	-	ATAATCAATCTAGACTATCGTATTTGCCTCC
+KJ642613.1_masked	2749	2777	359ba5b8_1_RIGHT_2	1	-	GTCAATCTAGACTATCGTATTTGCCTCC
+KJ642613.1_masked	2480	2502	359ba5b8_2_LEFT_1	2	+	CCATTGGATGGTGCATGTGGTG
+KJ642613.1_masked	5350	5381	359ba5b8_2_RIGHT_1	2	-	GTGGTATCCCAGATGAAAATGATGTTAAATT
+KJ642613.1_masked	5177	5212	359ba5b8_3_LEFT_1	1	+	ATGATACTAAATCTATATAACCTGCATAGATAGCG
+KJ642613.1_masked	8052	8082	359ba5b8_3_RIGHT_1	1	-	ACTAGACGATGATACAGATATATGGACTCC
+KJ642613.1_masked	7912	7945	359ba5b8_4_LEFT_1	2	+	AAAATCTAGTTACCTTGAAAATGAATACAGTGG
+KJ642613.1_masked	10804	10837	359ba5b8_4_RIGHT_1	2	-	TTGATGATAATACCTACATTTCTAATCTTCCGT
+KJ642613.1_masked	10553	10579	359ba5b8_5_LEFT_1	1	+	ACATATAGCTAAACCCAGGCATACGT
+KJ642613.1_masked	13430	13463	359ba5b8_5_RIGHT_1	1	-	AAACCTACAAAGAAACGATATGTTAATAATCCG
+KJ642613.1_masked	13259	13289	359ba5b8_6_LEFT_1	2	+	CGAGAAAATCAAATGTCTAAGTTCTAACGG
+KJ642613.1_masked	16132	16164	359ba5b8_6_RIGHT_1	2	-	CTACGGATGCAAACTAAAAATTATTTCGAATG
+KJ642613.1_masked	15672	15702	359ba5b8_7_LEFT_1	1	+	CCTAATACGGAAATAAGACATAAACACGCA
+KJ642613.1_masked	18492	18525	359ba5b8_7_RIGHT_1	1	-	CAGTTTAAAAATGTACGAAATATAGAGGTGAGC
+KJ642613.1_masked	18342	18371	359ba5b8_8_LEFT_1	2	+	GGATGATGATATCACTGTTTCCAGAGTAG
+KJ642613.1_masked	21061	21095	359ba5b8_8_RIGHT_1	2	-	CGTGATATTTTCTATCAATGGGGAAATTATTACG
+KJ642613.1_masked	20914	20947	359ba5b8_9_LEFT_1	1	+	CTACATTGTTTATGGTGATGTTTATCTTCTTCC
+KJ642613.1_masked	23755	23778	359ba5b8_9_RIGHT_1	1	-	TCGGATTCGAAGCCAGGATAGTG
+KJ642613.1_masked	23626	23652	359ba5b8_10_LEFT_1	2	+	GAGAGGCGTATTTCCATCATGATCTG
+KJ642613.1_masked	26501	26532	359ba5b8_10_RIGHT_1	2	-	AGGGAATAAAATGTACAATCTTAAACTCCCT
+KJ642613.1_masked	26345	26377	359ba5b8_11_LEFT_1	1	+	TTCGTCTACATCTATCTTTACATTCTGAAACA
+KJ642613.1_masked	29220	29246	359ba5b8_11_RIGHT_1	1	-	AATTAAGGCTGGATTTGCTAGTCAGG
+KJ642613.1_masked	29035	29062	359ba5b8_12_LEFT_1	2	+	CGTTTCCTTATGAAGATGATGTTTGGC
+KJ642613.1_masked	31910	31936	359ba5b8_12_RIGHT_1	2	-	CGTAATGGGAGGACATTCTGAAACTG
+KJ642613.1_masked	31777	31803	359ba5b8_13_LEFT_1	1	+	AATTCCGCATTTCTACCAACCAAGAA
+KJ642613.1_masked	34652	34687	359ba5b8_13_RIGHT_1	1	-	GTCATCGTTACGACTACTATGAATATATCTGTAAA
+KJ642613.1_masked	34514	34545	359ba5b8_14_LEFT_1	2	+	TTATCTACTGTTCCTAATATCATATGCGGTG
+KJ642613.1_masked	37378	37399	359ba5b8_14_RIGHT_1	2	-	ATTAATCGTGTGTGCGTGGGC
+KJ642613.1_masked	37242	37275	359ba5b8_15_LEFT_1	1	+	CGCCTTTAGAAAAACTTTAGAAGAATATCTCAA
+KJ642613.1_masked	40117	40139	359ba5b8_15_RIGHT_1	1	-	TCCACGTACCCGGGTAATACCT
+KJ642613.1_masked	39985	40016	359ba5b8_16_LEFT_1	2	+	CTGTTAGCAACGGTATATCGAATAGATTACT
+KJ642613.1_masked	42857	42889	359ba5b8_16_RIGHT_1	2	-	GCAAATCGATGCTTTGTTAAAATAGATACTCC
+KJ642613.1_masked	42697	42729	359ba5b8_17_LEFT_1	1	+	AACTTTATCAATACACGTTAATACAAACCCAG
+KJ642613.1_masked	45556	45583	359ba5b8_17_RIGHT_1	1	-	CTCTGTGAAAAAGTTTGTGTTGAGACC
+KJ642613.1_masked	45417	45450	359ba5b8_18_LEFT_1	2	+	TTTAACATATGATATTCGTTCACACTAGGTACT
+KJ642613.1_masked	48184	48206	359ba5b8_18_RIGHT_1	2	-	ACGGCCTACAGATTCTGATGCT
+KJ642613.1_masked	48050	48077	359ba5b8_19_LEFT_1	1	+	CAGTACTCATTAATAACGGTGACAGGG
+KJ642613.1_masked	50923	50956	359ba5b8_19_RIGHT_1	1	-	GGAAAGATATAATCCCTAAACGTTTCTGTTAGA
+KJ642613.1_masked	50672	50707	359ba5b8_20_LEFT_1	2	+	CTTATAGGCGTAAATTATGACTTAGTTCTTAATCC
+KJ642613.1_masked	53545	53581	359ba5b8_20_RIGHT_1	2	-	CGATTGACGTCTGAAATAGTTAATCTATTGGATAAT
+KJ642613.1_masked	53368	53399	359ba5b8_21_LEFT_1	1	+	TGTTTTACGTACCTGGGTATTCAATTACTAC
+KJ642613.1_masked	56243	56273	359ba5b8_21_RIGHT_1	1	-	AGATATTAAAGATAGAAAATGCTCCGTCGC
+KJ642613.1_masked	56117	56140	359ba5b8_22_LEFT_1	2	+	TCCAACGAGTAACATCCGTCTGG
+KJ642613.1_masked	58966	58998	359ba5b8_22_RIGHT_1	2	-	GAAATAATAAACGTCACTGATATCGTTAAGGC
+KJ642613.1_masked	58773	58804	359ba5b8_23_LEFT_1	1	+	ATAGGCATTGATTTTTAAAAGGTATGTAGCC
+KJ642613.1_masked	61633	61658	359ba5b8_23_RIGHT_1	1	-	TTGAAACTTCACCAAGACCTACAGC
+KJ642613.1_masked	61437	61466	359ba5b8_24_LEFT_1	2	+	AGTCTCTCCTTCCAACATAATAAAAGTGG
+KJ642613.1_masked	64277	64309	359ba5b8_24_RIGHT_1	2	-	ACTGTATTAATGCTTTTGATGGTAATTTCTGG
+KJ642613.1_masked	64139	64166	359ba5b8_25_LEFT_1	1	+	GTAGCGTACAAAATTATCGTTCCTGGT
+KJ642613.1_masked	67012	67039	359ba5b8_25_RIGHT_1	1	-	GTTTATATGTGCGGGTTTTCCTAGTGA
+KJ642613.1_masked	66775	66811	359ba5b8_26_LEFT_1	2	+	CCATTTATCATGGAAAAGAATTTACCAGATATCTTC
+KJ642613.1_masked	69620	69655	359ba5b8_26_RIGHT_1	2	-	GATAGTAAGTCGATATTAATATCCTTGACGAATGA
+KJ642613.1_masked	69415	69443	359ba5b8_27_LEFT_1	1	+	CGCGTCTCCGTATCGTATAAATATTTCA
+KJ642613.1_masked	72274	72304	359ba5b8_27_RIGHT_1	1	-	GCATTTCTGCCTTTATTTCTTCTTCCATAA
+KJ642613.1_masked	72087	72120	359ba5b8_28_LEFT_1	2	+	GTATTCATAAAATACGTAAACGGATGGGTAAAA
+KJ642613.1_masked	74963	74995	359ba5b8_28_RIGHT_1	2	-	CGTCGTTCTACAATTTTTGACATAGTTTCAAA
+KJ642613.1_masked	74832	74863	359ba5b8_29_LEFT_1	1	+	CGCAACAATTGTAGATACCATTAATCACTGA
+KJ642613.1_masked	77707	77740	359ba5b8_29_RIGHT_1	1	-	GCTCTAGACCGTGTATAACAAAATCTACAAATT
+KJ642613.1_masked	77575	77602	359ba5b8_30_LEFT_1	2	+	AACTTCTCCGATGATTATTGCTACCAC
+KJ642613.1_masked	80441	80470	359ba5b8_30_RIGHT_1	2	-	GACGAGGATCTATGTATCTAACAGGATCT
+KJ642613.1_masked	80256	80287	359ba5b8_31_LEFT_1	1	+	GAATCTCTTTCAGAGGAATACAGACAATTGA
+KJ642613.1_masked	83059	83088	359ba5b8_31_RIGHT_1	1	-	TTTATCATGACGGACGAACAAATTTATGC
+KJ642613.1_masked	82935	82958	359ba5b8_32_LEFT_1	2	+	GCTTCGTTTACATGGCTCGTACC
+KJ642613.1_masked	85725	85749	359ba5b8_32_RIGHT_1	2	-	GCATTATCCTCAGTGGTGGGTTTG
+KJ642613.1_masked	85584	85614	359ba5b8_33_LEFT_1	1	+	TCTTATCTATCCAGATGAGTCCATGACTTG
+KJ642613.1_masked	88459	88492	359ba5b8_33_RIGHT_1	1	-	GGATTTTATTTTGAAATAGCCAGAATCGAAAAC
+KJ642613.1_masked	88331	88359	359ba5b8_34_LEFT_1	2	+	GCTACCGTTCCTATTCTAGACCAAAAAT
+KJ642613.1_masked	91206	91238	359ba5b8_34_RIGHT_1	2	-	GATTAGTACGAGTTTATCCTTCAATGACAAGA
+KJ642613.1_masked	91044	91076	359ba5b8_35_LEFT_1	1	+	CCGCATTAAATGATGAAACTAAGTCACTATTT
+KJ642613.1_masked	93919	93951	359ba5b8_35_RIGHT_1	1	-	AACGTAATCAATGGCGGTTTAATAAATACTAG
+KJ642613.1_masked	93722	93753	359ba5b8_36_LEFT_1	2	+	AGGCATAGATTACGAATATATAAAAGACGCT
+KJ642613.1_masked	96595	96620	359ba5b8_36_RIGHT_1	2	-	TGGTACACCTACAGTAGCTCACATC
+KJ642613.1_masked	96412	96437	359ba5b8_37_LEFT_1	1	+	TCCTATAGGACCTTCCAACTGTGGA
+KJ642613.1_masked	99287	99315	359ba5b8_37_RIGHT_1	1	-	TGTCTCGTATGTTAGCTTCTACAGTCTT
+KJ642613.1_masked	99133	99159	359ba5b8_38_LEFT_1	2	+	TGTTTTATTAACCGAACGAGGAGACC
+KJ642613.1_masked	102008	102036	359ba5b8_38_RIGHT_1	2	-	ACAGCTTTTTGATGTCAAAGGGTAAAAC
+KJ642613.1_masked	101770	101803	359ba5b8_39_LEFT_1	1	+	GTTTTCGTCAAACATTATGTCTGAATCCTATAC
+KJ642613.1_masked	104640	104670	359ba5b8_39_RIGHT_1	1	-	AGTAGTTAATAAAATAGCGGACACGGATAC
+KJ642613.1_masked	104437	104470	359ba5b8_40_LEFT_1	2	+	TGTATTAACGACGATAAATACGAATATCTGTCT
+KJ642613.1_masked	107311	107339	359ba5b8_40_RIGHT_1	2	-	CGATCCAGTGGATACGGAATTCATTAAT
+KJ642613.1_masked	107108	107132	359ba5b8_41_LEFT_1	1	+	CATAATCGATATAGGCCGCGTGTG
+KJ642613.1_masked	109968	109993	359ba5b8_41_RIGHT_1	1	-	GGTGGTGAAGTTGGGTATTTCTGTT
+KJ642613.1_masked	109782	109812	359ba5b8_42_LEFT_1	2	+	TTTGTGAGTTTTCCTTAAAGTAACAGCTTC
+KJ642613.1_masked	112637	112666	359ba5b8_42_RIGHT_1	2	-	GTCAGGACAAATAGAAACGAGCTATTTCA
+KJ642613.1_masked	112475	112511	359ba5b8_43_LEFT_1	1	+	GACAGAAGAATATGATGATTAGATGGAGAGTATATT
+KJ642613.1_masked	115350	115371	359ba5b8_43_RIGHT_1	1	-	TGGTGCCGTTGTGAAATCGGT
+KJ642613.1_masked	115215	115244	359ba5b8_44_LEFT_1	2	+	GATACTATATCTTCGGTATCTTGACGCAG
+KJ642613.1_masked	118090	118116	359ba5b8_44_RIGHT_1	2	-	TGCTATATAAGGCGCCACGATAATGT
+KJ642613.1_masked	117950	117982	359ba5b8_45_LEFT_1	1	+	CCATAGATCTAAGGATGATGAGAGAAAACTAG
+KJ642613.1_masked	120755	120790	359ba5b8_45_RIGHT_1	1	-	ACTATTTCTATGCGATATCAATCTCTTATTCCTAG
+KJ642613.1_masked	120546	120573	359ba5b8_46_LEFT_1	2	+	ACATGGATTTGGTAACTTTGATAGCCG
+KJ642613.1_masked	123417	123450	359ba5b8_46_RIGHT_1	2	-	TGTCAATAAATGATTGGTATTCTTCTGTTGATC
+KJ642613.1_masked	123097	123119	359ba5b8_47_LEFT_1	1	+	TCCACCGATCTGCGCTAGTAGA
+KJ642613.1_masked	125961	125993	359ba5b8_47_RIGHT_1	1	-	AGATATTACAATATGCTTGATGACTTCTCTGC
+KJ642613.1_masked	125742	125778	359ba5b8_48_LEFT_1	2	+	GAGATAAATATCATCAATATAGAGATTAGAGGAGGG
+KJ642613.1_masked	128594	128624	359ba5b8_48_RIGHT_1	2	-	TCGAAAGAGCGTTCCATAATAGAGTATAAC
+KJ642613.1_masked	128411	128442	359ba5b8_49_LEFT_1	1	+	AGATAGTGATAACGGAATAGACTTTCTGAGA
+KJ642613.1_masked	131286	131320	359ba5b8_49_RIGHT_1	1	-	GGTCATTACCTCTTTAAAGATATTTACAGTGAAC
+KJ642613.1_masked	131076	131108	359ba5b8_50_LEFT_1	2	+	TTATAGACCGTTACATTTCCAATATGTATCGT
+KJ642613.1_masked	133939	133972	359ba5b8_50_RIGHT_1	2	-	TTCACAAAAGATTTTATCCGATAATTCTTCCTC
+KJ642613.1_masked	133801	133825	359ba5b8_51_LEFT_1	1	+	GCCGCATATTCTACTAAGCCGTAC
+KJ642613.1_masked	136666	136698	359ba5b8_51_RIGHT_1	1	-	ACAAGCATTTGTCTAAGCCTATTACTAATACT
+KJ642613.1_masked	136531	136563	359ba5b8_52_LEFT_1	2	+	GGGAACATAATTAGGATCTTCTAATGGATTGT
+KJ642613.1_masked	139406	139437	359ba5b8_52_RIGHT_1	2	-	GATGAAGTTCTATTTAGGTTGGAAAATCACG
+KJ642613.1_masked	139241	139275	359ba5b8_53_LEFT_1	1	+	GGTACAATTCCGTTCCATAAATTTATAATGTTCG
+KJ642613.1_masked	142116	142141	359ba5b8_53_RIGHT_1	1	-	GGCTAACATTACGCATTTTTGCAGT
+KJ642613.1_masked	141925	141947	359ba5b8_54_LEFT_1	2	+	TCCTTATCGGCGGTATCGGTAC
+KJ642613.1_masked	144735	144761	359ba5b8_54_RIGHT_1	2	-	TTCCAGCAACACTATCGTAAATGTGT
+KJ642613.1_masked	144559	144589	359ba5b8_55_LEFT_1	1	+	TCCAGCAAATCTAGTAAATCAACTGATAGC
+KJ642613.1_masked	147433	147457	359ba5b8_55_RIGHT_1	1	-	CCACATGGTCCGTCAAATCTTCTC
+KJ642613.1_masked	147259	147284	359ba5b8_56_LEFT_1	2	+	AGTAGTATGCGGAACCAATAACGGA
+KJ642613.1_masked	150129	150160	359ba5b8_56_RIGHT_1	2	-	AGAAAACCATCAATACTCAACAACTATACGT
+KJ642613.1_masked	149999	150028	359ba5b8_57_LEFT_1	1	+	ACTTATTCTGATTCTTCTAGCCATTTCCG
+KJ642613.1_masked	152853	152878	359ba5b8_57_RIGHT_1	1	-	ACAAGTTCCTGGAGTTAACGAGAGA
+KJ642613.1_masked	152623	152649	359ba5b8_58_LEFT_1	2	+	TGTTTATGAACTCGAATACCGCCTCA
+KJ642613.1_masked	155492	155513	359ba5b8_58_RIGHT_1	2	-	TTTCCCGGTTCGTATACGCCA
+KJ642613.1_masked	155328	155359	359ba5b8_59_LEFT_1	1	+	CCATTGTATGAACGAAGATCTTTTCTCAAAG
+KJ642613.1_masked	158200	158233	359ba5b8_59_RIGHT_1	1	-	TTCCAAATACTTTAGAAAATCATTCGTGTACTG
+KJ642613.1_masked	158057	158090	359ba5b8_60_LEFT_1	2	+	CTGATGATGTTCAAACTAATACATCTGAAACAT
+KJ642613.1_masked	160813	160842	359ba5b8_60_RIGHT_1	2	-	AGAGTTTACCATGGTAATATATTGCAGCA
+KJ642613.1_masked	160643	160679	359ba5b8_61_LEFT_1	1	+	TGATCTAGAAACACTTGGATATTGTATGATTAGATG
+KJ642613.1_masked	163518	163547	359ba5b8_61_RIGHT_1	1	-	AATCTATTACGTGCATTAACATTTGCTCC
+KJ642613.1_masked	163351	163381	359ba5b8_62_LEFT_1	2	+	ACACACCGTTTATCCTATTATGTAAACACG
+KJ642613.1_masked	166006	166032	359ba5b8_62_RIGHT_1	2	-	ACCTCCAGTGATCGTACCAATAGTAG
+KJ642613.1_masked	165765	165799	359ba5b8_63_LEFT_1	1	+	GGTATAATGATGAATGAATTCGATACTGTATGTG
+KJ642613.1_masked	165766	165799	359ba5b8_63_LEFT_2	1	+	GTATAATGATGAATGAATGCGATACTGTATGTG
+KJ642613.1_masked	168619	168647	359ba5b8_63_RIGHT_1	1	-	GACATTCTTTTAGCAATGATTCCACACC
+KJ642613.1_masked	168254	168284	359ba5b8_64_LEFT_1	2	+	CACTCCATGCTAAAACAGAGTTGTAATAGA
+KJ642613.1_masked	171232	171268	359ba5b8_64_RIGHT_1	2	-	CATATTGATATAATCACCAGTTGAATAGAACACATC
+KJ642613.1_masked	170891	170921	359ba5b8_65_LEFT_1	1	+	AGGAATTTACCAGTGATTATCCCTTTTACG
+KJ642613.1_masked	173763	173799	359ba5b8_65_RIGHT_1	1	-	GTTAGTATATTTAAAACATAAATCGGACGATGACTC
+KJ642613.1_masked	173408	173440	359ba5b8_66_LEFT_1	2	+	CCACATCCTTTATTAAATCATGAATGGGAATT
+KJ642613.1_masked	176220	176245	359ba5b8_66_RIGHT_1	2	-	ACCTCGTGCGTTTATATCATTTCCG
+KJ642613.1_masked	176012	176041	359ba5b8_67_LEFT_1	1	+	TCTATGAACGCAGGTATATAGTACACTCC
+KJ642613.1_masked	178947	178976	359ba5b8_67_RIGHT_1	1	-	CAATACGGAATATCTACGTCCATGTCATT
+KJ642613.1_masked	178793	178823	359ba5b8_68_LEFT_1	2	+	AACATACGGATGAAAATGTTTTGATTCTCC
+KJ642613.1_masked	178793	178823	359ba5b8_68_LEFT_2	2	+	ACATACGGATGAAAATGTTTTGATTTCTCC
+KJ642613.1_masked	181634	181663	359ba5b8_68_RIGHT_1	2	-	TGTTTTCAAACATTCAGTGATATTGGTGG
+KJ642613.1_masked	181254	181281	359ba5b8_69_LEFT_1	1	+	AGAACTACAAGTGACTCCAACATATGC
+KJ642613.1_masked	184129	184153	359ba5b8_69_RIGHT_1	1	-	ATCATAGGGACAACCACCAGCTAA
+KJ642613.1_masked	183713	183742	359ba5b8_70_LEFT_1	2	+	ACGATACCAGTTTTAAACAGAATACGGAT
+KJ642613.1_masked	186580	186619	359ba5b8_70_RIGHT_1	2	-	CGATTATATAATGGATGATATGGTAATATGTAACTACCG
+KJ642613.1_masked	184764	184789	359ba5b8_71_LEFT_1	1	+	GGCTAGAGGAATGCCGTTTAGATCA
+KJ642613.1_masked	187608	187633	359ba5b8_71_RIGHT_1	1	-	ACCATCAGAAGCTTTAAGGAGACGA