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Fix nextflow.config docker profile
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BioWilko committed Nov 21, 2024
1 parent f5334d4 commit 73ed345
Showing 1 changed file with 3 additions and 5 deletions.
8 changes: 3 additions & 5 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -62,7 +62,7 @@ manifest {
description = 'Run the ARTIC fieldbioinformatics workflow on multiplexed MPXV ONT data'
mainScript = 'main.nf'
nextflowVersion = '>=23.04.2'
version = 'v1.2.6'
version = 'v1.2.7'
}

epi2melabs {
Expand Down Expand Up @@ -101,12 +101,10 @@ profiles {
// if no other profile is given on the CLI
standard {
docker {
enabled = true
enabled = true
// this ensures container is run as host user and group, but
// also adds host user to the within-container group
runOptions = '--user $(id -u):$(id -g) --group-add 100'
// This is required to run on arm for now, when arm docker builds are available it will be changed
engineOptions = '--platform linux/amd64'
runOptions = '--user $(id -u):$(id -g) --group-add 100 --platform linux/amd64'
}
}

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