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Viral reclassification #75 #81

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Viral reclassification #75 #81

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Commits on Nov 26, 2024

  1. refactor kraken running ahead of adding viral classification step - s… 

    …ome parameter name changes but gives exactly the same output
    @rmcolq
    rmcolq committed Nov 26, 2024
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Commits on Nov 27, 2024

  1. add option to reclassify viral and unclassified fraction

    @rmcolq
    rmcolq committed Nov 27, 2024
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  2. bugfixes while testing

    @rmcolq
    rmcolq committed Nov 27, 2024
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Commits on Nov 29, 2024

  1. update after more testing

    @rmcolq
    rmcolq committed Nov 29, 2024
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  2. be explicit about the percentage threshold being of classified reads,… 

    … not all reads
    @rmcolq
    rmcolq committed Nov 29, 2024
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