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Reimplement Dataset and InferenceData using DimensionalData #191

Merged
merged 133 commits into from
Jul 9, 2022
Merged

Reimplement Dataset and InferenceData using DimensionalData #191

merged 133 commits into from
Jul 9, 2022

Commits on Jun 22, 2022

  1. Add DimensionalData as dependency

    @sethaxen
    sethaxen committed Jun 22, 2022
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  2. Create lookup for group order

    @sethaxen
    sethaxen committed Jun 22, 2022
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  3. Implement Dataset using DimensionalData

    @sethaxen
    sethaxen committed Jun 22, 2022
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  4. Remove methods defined in DimensionalData

    @sethaxen
    sethaxen committed Jun 22, 2022
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  5. Deprecate indexing with strings

    @sethaxen
    sethaxen committed Jun 22, 2022
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  6. Fix show method

    @sethaxen
    sethaxen committed Jun 22, 2022
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  7. Simplify dataset_to_dict implementation

    @sethaxen
    sethaxen committed Jun 22, 2022
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  8. Implement converters to/from xarray

    @sethaxen
    sethaxen committed Jun 22, 2022
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  9. Add accessor for wrapped data

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    sethaxen committed Jun 22, 2022
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  10. Update attribute get/setters

    @sethaxen
    sethaxen committed Jun 22, 2022
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  11. Fix deprecation of indexing

    @sethaxen
    sethaxen committed Jun 22, 2022
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  12. Deprecate using a string for group name

    @sethaxen
    sethaxen committed Jun 22, 2022
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  13. Remove xarray designations

    @sethaxen
    sethaxen committed Jun 22, 2022
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  14. Document non-allocating behavior

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    sethaxen committed Jun 22, 2022
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  15. Implement InferenceData as wrapping a dict of Datasets

    @sethaxen
    sethaxen committed Jun 22, 2022
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  16. Update group accessors

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    sethaxen committed Jun 22, 2022
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  17. Update property accessors

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    sethaxen committed Jun 22, 2022
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  18. Remove redundant constructors

    @sethaxen
    sethaxen committed Jun 22, 2022
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  19. Update function implementations

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    sethaxen committed Jun 22, 2022
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  20. Add hasgroup

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    sethaxen committed Jun 22, 2022
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  21. Deprecate addition of InferenceData

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    sethaxen committed Jun 22, 2022
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  22. Add converters to/from xarray

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    sethaxen committed Jun 22, 2022
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  23. Remove reference to xarray

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    sethaxen committed Jun 22, 2022
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  24. Implement merge and merge!

    @sethaxen
    sethaxen committed Jun 22, 2022
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  25. Replace concat! with merge!

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    sethaxen committed Jun 22, 2022
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  26. Don't use deprecated method

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    sethaxen committed Jun 22, 2022
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  27. Update diagnostics tests

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    sethaxen committed Jun 22, 2022
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  28. Increment version number

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    sethaxen committed Jun 22, 2022
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  29. Increment ArviZ version

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    sethaxen committed Jun 22, 2022
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  30. Remove deprecation

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    sethaxen committed Jun 22, 2022
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Commits on Jun 23, 2022

  1. Don't use xarray html reprs

    @sethaxen
    sethaxen committed Jun 23, 2022
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  2. Add back plaintext show method

    @sethaxen
    sethaxen committed Jun 23, 2022
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  3. Make sure strings are mapped to symbols

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    sethaxen committed Jun 23, 2022
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  4. Let strings be strings

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    sethaxen committed Jun 23, 2022
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  5. Convert dims to range if possible

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    sethaxen committed Jun 23, 2022
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  6. Use namedtuple backing for InferenceData

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    sethaxen committed Jun 23, 2022
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  7. Make Dataset just wrap an AbstractDimStack

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    sethaxen committed Jun 23, 2022
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  8. Don't automatically convert xarray to Dataset

    @sethaxen
    sethaxen committed Jun 23, 2022
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  9. Don't assume InferenceData is mutable

    @sethaxen
    sethaxen committed Jun 23, 2022
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Commits on Jun 24, 2022

  1. Correctly convert mixed type arrays

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    sethaxen committed Jun 24, 2022
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  2. Move xarray code to its own file

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    sethaxen committed Jun 24, 2022
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  3. Collect Python interop at the end of file

    @sethaxen
    sethaxen committed Jun 24, 2022
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  4. Collect dimensionaldata code

    @sethaxen
    sethaxen committed Jun 24, 2022
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  5. Fix conversion from PyObject

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    sethaxen committed Jun 24, 2022
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  6. Work around filter not being implemented for NamedTuple

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    sethaxen committed Jun 24, 2022
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  7. Avoid using entire DimensionalData namespace

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    sethaxen committed Jun 24, 2022
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Commits on Jun 25, 2022

  1. Export Dataset

    @sethaxen
    sethaxen committed Jun 25, 2022
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  2. Revert "Export Dataset" 

    This reverts commit a3aa171.
    @sethaxen
    sethaxen committed Jun 25, 2022
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  3. Update dataset construction tests

    @sethaxen
    sethaxen committed Jun 25, 2022
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  4. Fix rebuild overload

    @sethaxen
    sethaxen committed Jun 25, 2022
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  5. Remove getindex

    @sethaxen
    sethaxen committed Jun 25, 2022
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  6. Reorganize convert methods

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    sethaxen committed Jun 25, 2022
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  7. Add and fix more tests

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    sethaxen committed Jun 25, 2022
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  8. Add and repair tests

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    sethaxen committed Jun 25, 2022
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  9. Use DimensionalData.index

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    sethaxen committed Jun 25, 2022
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  10. Add DimensionalData to test suite

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    sethaxen committed Jun 25, 2022
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  11. Test Dataset to/from xarray conversion

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    sethaxen committed Jun 25, 2022
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  12. Update convert_to_dataset tests

    @sethaxen
    sethaxen committed Jun 25, 2022
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  13. Use tuple method of index

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    sethaxen committed Jun 25, 2022
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  14. Generalize processing of python arrays

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    sethaxen committed Jun 25, 2022
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  15. Use issetequal

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    sethaxen committed Jun 25, 2022
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  16. Update convert_to_constant_dataset tests

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    sethaxen committed Jun 25, 2022
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  17. Update remaining dataset tests

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    sethaxen committed Jun 25, 2022
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  18. Make dataset tests a single testset

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    sethaxen committed Jun 25, 2022
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Commits on Jun 26, 2022

  1. Repair dataset_to_dict

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    sethaxen committed Jun 26, 2022
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  2. Run formatter

    @sethaxen
    sethaxen committed Jun 26, 2022
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  3. Allow accessing variables with properties

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    sethaxen committed Jun 26, 2022
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  4. Rename varname to var_name

    @sethaxen
    sethaxen committed Jun 26, 2022
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  5. Implement indexing and iteration interfaces

    @sethaxen
    sethaxen committed Jun 26, 2022
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  6. Get all supported groups

    @sethaxen
    sethaxen committed Jun 26, 2022
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  7. Make iteration type inferrable

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    sethaxen committed Jun 26, 2022
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  8. Update many InferenceData tests

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    sethaxen committed Jun 26, 2022
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  9. Run formatter

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    sethaxen committed Jun 26, 2022
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  10. Update many tests

    @sethaxen
    sethaxen committed Jun 26, 2022
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  11. Update conversion tests

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    sethaxen committed Jun 26, 2022
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  12. Remove addition of InferenceDatas

    @sethaxen
    sethaxen committed Jun 26, 2022
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  13. Test conversion to Python

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    sethaxen committed Jun 26, 2022
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  14. Add helper function to check idatas are equal

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    sethaxen committed Jun 26, 2022
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Commits on Jul 2, 2022

  1. Add dependencies

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    sethaxen committed Jul 2, 2022
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  2. Define default sample dims

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    sethaxen committed Jul 2, 2022
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  3. Define namedtuple_to_dataset

    @sethaxen
    sethaxen committed Jul 2, 2022
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  4. Implement convert_to_inference_data

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    sethaxen committed Jul 2, 2022
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  5. Implement package_version

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    sethaxen committed Jul 2, 2022
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  6. Add simpler forms of rekey

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    sethaxen committed Jul 2, 2022
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  7. Use OrderedDict and add/get metadata to/from arrays

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    sethaxen committed Jul 2, 2022
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  8. Fix InferenceData docstring

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    sethaxen committed Jul 2, 2022
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  9. Update concat test

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    sethaxen committed Jul 2, 2022
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  10. Update helpers

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    sethaxen committed Jul 2, 2022
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  11. Add schema check

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    sethaxen committed Jul 2, 2022
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  12. Fix broken tests

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    sethaxen committed Jul 2, 2022
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Commits on Jul 3, 2022

  1. Run formatter

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  2. Test namedtuple_to_dataset

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  3. Actually use convert_to_dataset

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  4. Update from_namedtuple

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  5. Update docstrings

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  6. Add broken test for inferrability

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  7. Make sure dims and coords default to NamedTuple

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  8. Update MCMCChains converter

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  9. Update tests

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  10. Remove dead code

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  11. Make NamedTuple

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  12. Update docstrings

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  13. Update test dependencies

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  14. Mark as dev release

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  15. Update mpl_examples.md

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  16. Update quickstart.jl

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  17. Always pass an array

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  18. Don't send a NamedTuple to Python

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  19. Run formatter

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  20. Update storage documentation

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  21. Avoid patterns that poorly convert to Python types

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  22. Revert back to String

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  23. Reduce indentation in REPL display of InferenceData

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    sethaxen committed Jul 3, 2022
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  24. Convert special arrays to raw arrays for plot_kde

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  25. Test package_version

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  26. Remove outdated reference to convert_to_constant_dataset

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  27. Fix typo

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    sethaxen committed Jul 3, 2022
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  28. Fix typo

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    sethaxen committed Jul 3, 2022
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  29. Don't export undefined function

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    sethaxen committed Jul 3, 2022
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  30. Remove concat! from API docs

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    sethaxen committed Jul 3, 2022
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  31. Make tests work for Julia 1.6

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    sethaxen committed Jul 3, 2022
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  32. Avoid setting dims and coords unless defined

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    sethaxen committed Jul 3, 2022
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  33. Remove unused function

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    sethaxen committed Jul 3, 2022
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  34. Merge PyObject conversion functions

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    sethaxen committed Jul 3, 2022
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  35. Don't drop directly to Python

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    sethaxen committed Jul 3, 2022
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  36. Add missing tests

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    sethaxen committed Jul 3, 2022
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  37. Test default_var_name

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    sethaxen committed Jul 3, 2022
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  38. Generalize convert function

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    sethaxen committed Jul 3, 2022
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  39. Add missing tests

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    sethaxen committed Jul 3, 2022
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Commits on Jul 9, 2022

  1. Test using type for dimension

    @sethaxen
    sethaxen committed Jul 9, 2022
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  2. Test prior_predictive as Chains

    @sethaxen
    sethaxen committed Jul 9, 2022
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  3. Add missing tests

    @sethaxen
    sethaxen committed Jul 9, 2022
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  4. Repair rekey for Dict

    @sethaxen
    sethaxen committed Jul 9, 2022
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