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Update from_cmdstanpy converter to follow schema convention #1550

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merged 1 commit into from
Feb 15, 2021

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utkarsh-maheshwari
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Description

Matched sample stats according to InferenceData schema specification in from_cmdstanpy converter. Addreses issue #1514

Checklist

  • Follows official PR format
  • Code style correct (follows pylint and black guidelines)
  • Changes are listed in changelog

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codecov bot commented Feb 9, 2021

Codecov Report

Merging #1550 (e520a79) into main (f4606e4) will increase coverage by 0.79%.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #1550      +/-   ##
==========================================
+ Coverage   90.27%   91.07%   +0.79%     
==========================================
  Files         105      105              
  Lines       11397    11362      -35     
==========================================
+ Hits        10289    10348      +59     
+ Misses       1108     1014      -94     
Impacted Files Coverage Δ
arviz/data/io_cmdstanpy.py 98.20% <100.00%> (+37.50%) ⬆️
arviz/plots/hdiplot.py 88.13% <0.00%> (-4.32%) ⬇️
arviz/plots/violinplot.py 83.33% <0.00%> (-3.04%) ⬇️
arviz/plots/forestplot.py 91.17% <0.00%> (-2.58%) ⬇️
arviz/plots/posteriorplot.py 87.50% <0.00%> (-2.50%) ⬇️
arviz/utils.py 87.34% <0.00%> (-1.95%) ⬇️
arviz/plots/densityplot.py 88.88% <0.00%> (-1.50%) ⬇️
arviz/stats/stats.py 96.12% <0.00%> (-0.45%) ⬇️
arviz/plots/loopitplot.py 97.72% <0.00%> (ø)
arviz/plots/backends/bokeh/loopitplot.py 94.87% <0.00%> (ø)
... and 4 more

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@OriolAbril
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Hi @utkarsh-maheshwari sorry for the inconvenience, a new cmdstanpy version was released and broke the ci tests, so we merged a fix before merging this PR. You'll now need to rebase/merge the latest changes and most importantly, handle the merge conflicts that arise. Not sure if you have ever handled merge conflicts, if you need help let us know

@OriolAbril
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Note: also fix the links in the first bullet point of changelog.

@utkarsh-maheshwari
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Not sure if you have ever handled merge conflicts, if you need help let us know

Okay, I would like to attempt it first and would seek help if any issue is there. Thanks!

@OriolAbril OriolAbril merged commit 8a6ca10 into arviz-devs:main Feb 15, 2021
@OriolAbril
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Thanks @utkarsh-maheshwari

@utkarsh-maheshwari utkarsh-maheshwari deleted the update-io_cmdstanpy branch February 16, 2021 02:53
utkarsh-maheshwari added a commit to utkarsh-maheshwari/arviz that referenced this pull request May 27, 2021
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2 participants