Fix installation

.pre-commit-config.yaml

@@ -7,17 +7,25 @@ repos:
         name: ensure we are not committing to branch `main`
         args:
           - --branch=main
-
-  # Make sure all imports are absolute in Python files.
-  - repo: https://github.com/MarcoGorelli/absolufy-imports
-    rev: v0.3.1
-    hooks:
-      - id: absolufy-imports
-        name: format Python imports using absolufy-imports
+      - id: check-json
+      - id: check-merge-conflict
+      - id: check-toml
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+        args:
+          - --fix=lf
+      - id: name-tests-test
+        args:
+          - --pytest-test-first
+      - id: pretty-format-json
+        args:
+          - --autofix
+      - id: trailing-whitespace
 
   # Sort Python imports using `isort`.
   - repo: https://github.com/pycqa/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
       - id: isort
         name: sort Python imports using isort
@@ -30,22 +38,16 @@ repos:
           - --trailing-comma
           - --use-parentheses
 
-  # Remove unused `# noqa` comments
-  - repo: https://github.com/asottile/yesqa
-    rev: v1.5.0
-    hooks:
-      - id: yesqa
-
   # Remove all unused imports for Python files.
   - repo: https://github.com/hadialqattan/pycln
-    rev: v2.1.5
+    rev: v2.4.0
     hooks:
       - id: pycln
         name: remove unused Python imports using pycln
 
   # Python formatting
   - repo: https://github.com/psf/black
-    rev: 23.3.0
+    rev: 24.4.2
     hooks:
       - id: black
         name: format Python code using black
@@ -55,7 +57,7 @@ repos:
 
   # Lint Python files using `ruff`.
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.0.275
+    rev: v0.4.8
     hooks:
       - id: ruff
         name: lint Python using ruff
@@ -67,7 +69,7 @@ repos:
 
   # Markdown formatting
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.16
+    rev: 0.7.17
     hooks:
       - id: mdformat
         name: format Markdown using mdformat
@@ -76,49 +78,29 @@ repos:
         additional_dependencies:
           - mdformat-myst==0.1.5
           - mdformat_tables==0.4.1
-          - mdformat-frontmatter==2.0.1
-
-  # YAML formatting
-  - repo: https://github.com/lyz-code/yamlfix
-    rev: 1.11.0
-    hooks:
-      - id: yamlfix
-        name: format YAML using yamlfix
-        args:
-          - ./
-
-  # TOML formatting
-  - repo: https://github.com/ComPWA/mirrors-taplo
-    rev: v0.8.0
-    hooks:
-      - id: taplo
-        name: format TOML using taplo
-        args:
-          - format
-          - --config=.taplo.toml
 
   # Check docstrings are formatted correctly
   - repo: https://github.com/jsh9/pydoclint
-    rev: 0.0.13
+    rev: 0.4.1
     hooks:
       - id: pydoclint
         args:
           - --config=pyproject.toml
 
   # Run `flake8` on Python files.
   - repo: https://github.com/pycqa/flake8
-    rev: 6.0.0
+    rev: 7.0.0
     hooks:
       - id: flake8
         name: inspect Python code using flake8
         args:
           - --verbose
         additional_dependencies:
-          - flake8-annotations==3.0.1
-          - flake8-builtins==2.1.0
+          - flake8-annotations==3.1.1
+          - flake8-builtins==2.5.0
           - flake8-debugger==4.1.2
           - flake8-docstrings==1.7.0
           - flake8-eradicate==1.5.0
-          - flake8-markdown==0.4.0
+          - flake8-markdown==0.5.0
           - flake8-print==5.0.0
           - flake8-pyproject==1.2.3

README.md

@@ -11,23 +11,28 @@ same view and interact with them.
 
 ### Contributor installation
 
+Clone the repo locally and `cd` into it.
+
+```bash
+git clone the https://github.com/arviz-devs/arviz_dashboard
+cd arviz_dashboard
+```
+
 We will use `mamba` to create a virtual environment where we will install a development version of
 ArviZ Dashboard. The first step is to follow the instructions here
 [https://github.com/conda-forge/miniforge#mambaforge](https://github.com/conda-forge/miniforge#mambaforge)
 to install the correct version of `mamba` for your operating system. **Note** that if you have
 `conda` installed already, you can exchange the command `mamba` for `conda` with the same results.
 
 ```bash
-mamba create --name arviz-dashboard pip python
-mamba activate arviz-dashboard
+mamba env create --file environment.yaml
+mamba activate arviz-dashboard-dev
 ```
 
-Once the virtual environment has been created, and you have activated it with the above commands,
-you can install the development requirements for `arviz_dashboard` with the following commands.
+Once the virtual environment has been created and activated, you can install the development
+requirements for `arviz_dashboard` using `pip`.
 
 ```bash
-git clone the https://github.com/arviz-devs/arviz_dashboard
-cd arviz_dashboard
 pip install --editable .[dev,examples]
 ```
 

environment.yaml

@@ -0,0 +1,11 @@
+name: arviz-dashboard-dev
+
+channels:
+  - conda-forge
+
+dependencies:
+  - python =3.11
+
+  # Package managers
+  - nodejs
+  - pip

pyproject.toml

@@ -1,25 +1,30 @@
 [build-system]
-build-backend = "hatchling.build"
-requires = ["hatchling"]
+build-backend = "setuptools.build_meta"
+requires = ["setuptools", "setuptools-scm"]
 
 [project]
 authors = [{name = "arviz-devs"}]
 classifiers = [
-  "Development Status :: 1 - Planning",
-  "Intended Audience :: Science/Research",
-  "Intended Audience :: Education",
-  "License :: OSI Approved :: Apache Software License",
-  "Programming Language :: Python",
-  "Programming Language :: Python :: 3",
-  "Programming Language :: Python :: 3.9",
-  "Programming Language :: Python :: 3.10",
-  "Programming Language :: Python :: 3.11",
-  "Topic :: Scientific/Engineering",
-  "Topic :: Scientific/Engineering :: Visualization",
-  "Topic :: Scientific/Engineering :: Mathematics",
+    "Development Status :: 1 - Planning",
+    "Intended Audience :: Science/Research",
+    "Intended Audience :: Education",
+    "License :: OSI Approved :: Apache Software License",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Topic :: Scientific/Engineering",
+    "Topic :: Scientific/Engineering :: Visualization",
+    "Topic :: Scientific/Engineering :: Mathematics",
 ]
-dependencies = ["arviz>0.15", "jupyterlab>4.0", "panel<1.0"]
-description = "Bayesian Dashboards built on top of Panel"
+dependencies = [
+    "arviz",
+    "bokeh",
+    "jupyterlab",
+    "panel",
+]
+description = "Dashboards for Bayesian modeling"
 dynamic = ["version"]
 keywords = []
 license = {file = "LICENSE"}
@@ -29,7 +34,12 @@ readme = {file = "README.md", content-type = "text/markdown"}
 requires-python = ">3.9"
 
 [project.optional-dependencies]
-dev = ["pre-commit"]
+dev = [
+    "ipdb",
+    "pre-commit",
+    "pyre-check",
+]
+test = ["pytest", "pytest-cov"]
 examples = ["pymc"]
 
 [project.urls]
@@ -38,49 +48,5 @@ examples = ["pymc"]
 "Homepage" = "https://github.com/arviz-devs/arviz_dashboard"
 "Repository" = "https://github.com/arviz-devs/arviz_dashboard"
 
-[tool.hatch.version]
-path = "src/arviz_dashboard/__init__.py"
-
-[tool.isort]
-force_grid_wrap = 0
-include_trailing_comma = true
-line_length = 100
-multi_line_output = 3
-profile = "black"
-use_parentheses = true
-
-[tool.black]
-line-length = 100
-
-[tool.ruff]
-line-length = 100
-per-file-ignores = {"__init__.py" = ["F401"]}
-
-[tool.pycln]
-all = true
-disable_all_dunder_policy = true
-expand_stars = true
-extend_exclude = "__init__.py"
-path = "src/arviz_dashboard"
-verbose = true
-
-[tool.yamlfix]
-explicit_start = false
-line_length = 100
-section_whitelines = 1
-sequence_style = "block_style"
-whitelines = 1
-
-[tool.flake8]
-ignore = [
-  "ANN002", # missing type annotations for *args
-  "ANN003", # missing type annotations for *kwargs
-  "D100", # missing docstring in public module
-  "D104", # missing docstring in public package
-  "D107", # missing docstring in __init__ methods of classes
-]
-max-line-length = 100
-per-file-ignores = ["__init__.py:F401"]
-
-[tool.pydoclint]
-style = "numpy"
+[tool.setuptools.dynamic]
+version = {attr = "arviz_dashboard.__version__"}