Make dev version #88
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| on: push | |
| name: R-CMD-check-with-sanitizers | |
| jobs: | |
| pre-condition: | |
| name: Check hash of src files | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: cache_hit | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| src | |
| key: san-${{ hashFiles('src/**') }} | |
| outputs: | |
| run_check: ${{ steps.cache_hit.outputs.cache-hit }} | |
| R-CMD-check: | |
| needs: pre-condition | |
| if: needs.pre-condition.outputs.run_check != 'true' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, img: 'r-devel-san'} | |
| - {os: ubuntu-latest, img: 'r-devel-ubsan-clang'} | |
| runs-on: ${{ matrix.config.os }} | |
| container: rocker/${{ matrix.config.img }}:latest | |
| name: ${{ matrix.config.os }} (${{ matrix.config.img }}) | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| /usr/local/lib/R/site-library | |
| key: ${{ matrix.config.img }} | |
| - name: Install dependencies | |
| env: | |
| ASAN_OPTIONS: "detect_odr_violation=0" | |
| shell: Rscriptdevel {0} | |
| run: | | |
| install.packages("remotes") | |
| library("remotes") | |
| install_cran(c("bigmemory")) | |
| install_cran(c("Matrix", "codetools", "cluster", "lattice", "class"), force = TRUE) | |
| update(dev_package_deps(dependencies = TRUE)) | |
| - name: Check with sanitizers | |
| env: | |
| NOT_CRAN: false | |
| ASAN_OPTIONS: "detect_leaks=0:detect_odr_violation=0" | |
| run: | | |
| Rdevel CMD build --no-build-vignettes --no-manual . | |
| Rdevel --vanilla CMD check *.tar.gz --as-cran --no-manual --ignore-vignettes | |
| continue-on-error: true | |
| - name: Show testthat output | |
| if: always() | |
| run: find *.Rcheck -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ matrix.config.img }}-results | |
| path: | | |
| *.Rcheck/*.out | |
| *.Rcheck/*.log |