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Align to the paths, if present #114

Merged
merged 6 commits into from
Aug 24, 2022
Merged

Align to the paths, if present #114

merged 6 commits into from
Aug 24, 2022

Commits on Aug 23, 2022

  1. Add first rudimentary support for path alignment.

    @asl
    asl committed Aug 23, 2022
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Commits on Aug 24, 2022

  1. Ensure Hit pointers are always stable

    @asl
    asl committed Aug 24, 2022
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  2. Simplify filtering

    @asl
    asl committed Aug 24, 2022
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  3. Factor out parsing and filtering

    @asl
    asl committed Aug 24, 2022
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  4. Build minimap index every time as it depends on -x option

    @asl
    asl committed Aug 24, 2022
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  5. Do mapping paths properly

    @asl
    asl committed Aug 24, 2022
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