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Include base pyproject when initializing cache settings (#9480)
## Summary Regression from https://github.com/astral-sh/ruff/pull/9453/files#diff-80a9c2637c432502a7075c792cc60db92282dd786999a78bfa9bb6f025afab35L482. Closes #9478. ## Test Plan ``` rm -rf .ruff_cache cargo run -p ruff_cli -- check ../foo.py ``` Failed prior to this PR; passes afterwards. The file must be outside of the current working directory, and must not have a `pyproject.toml` in any parent directory.
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