Update Dockerfile to spawn Jupter session

Dockerfile

@@ -1,4 +1,4 @@
-FROM continuumio/miniconda3
+FROM jupyter/scipy-notebook:python-3.11
 LABEL author="ATLAS Open Data Team @ CERN 2024"
 LABEL maintainer="Giovanni Guerrieri - giovanni.guerrieri@cern.ch"
 WORKDIR /opt/app
@@ -9,9 +9,22 @@ COPY binder/environment.yml .
 RUN conda env update -n base -f environment.yml && \
     conda clean -afy && \
     rm -rf /opt/conda/pkgs/*
-SHELL ["conda", "run", "-n", "analysis", "/bin/bash", "-c"]
+SHELL ["bash", "-c"]
 
-# # Expose port 8888 for Jupyter Lab
-# EXPOSE 8888
+# Expose port 8888 for Jupyter Lab
+EXPOSE 8888
 
-# CMD ["jupyter", "lab", "--ip=0.0.0.0", "--allow-root", "--no-browser"]
+USER root
+# Create a new non-root user
+ARG NB_USER=atlasuser
+ARG NB_UID=1001
+ARG NB_GID=100
+RUN adduser --disabled-password --gecos "" --uid $NB_UID --gid $NB_GID $NB_USER && \
+    mkdir -p /home/$NB_USER && \
+    chown -R $NB_USER:$NB_GID /home/$NB_USER /opt/app
+
+# Switch to the created user
+USER $NB_USER
+
+# Set the home directory as the working directory
+WORKDIR /home/$NB_USER

README.md

@@ -1,16 +1,36 @@
-# ATLAS Open Data
-
-## notebooks-collection-opendata
-A set of multiple notebooks using 8 TeV and 13 TeV ATLAS Open Data datasets
+[![Docker image](https://github.com/atlas-outreach-data-tools/notebooks-collection-opendata/actions/workflows/docker_push.yml/badge.svg)](https://github.com/atlas-outreach-data-tools/notebooks-collection-opendata/actions/workflows/docker_push.yml) [![Run all Jupyter Notebooks](https://github.com/atlas-outreach-data-tools/notebooks-collection-opendata/actions/workflows/notebooks-health-check.yml/badge.svg)](https://github.com/atlas-outreach-data-tools/notebooks-collection-opendata/actions/workflows/notebooks-health-check.yml)
+# ATLAS Open Data Jupyter Notebooks
+A set of multiple notebooks using 8 TeV and 13 TeV ATLAS Open Data datasets.
 
+## Run on Binder
 To execute in MyBinder:
 [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/atlas-outreach-data-tools/notebooks-collection-opendata/HEAD)
-
+
+For more complex needs, such as running multiple notebooks review the [Binder Documentation](https://mybinder.readthedocs.io/en/latest/#) for guidance on setting up a more personalized Binder environment.
+
 Note: before starting running the code in the jupyter notebooks, click on the up right button "not trusted" in order to get "trusted" displayed. This should lead the JavaScript to be executed, that is useful to visualise interactive histograms. If that doesn't work, simply go to the top of the notebook, find the cell that contains the line of code `%jsroot` and comment out that.
 
-For more, please go to:
-[http://opendata.atlas.cern](http://opendata.atlas.cern)
+## Run on Docker containers
+
+Docker provides a robust platform for developing, sharing, and running applications within containers.
+
+**Steps to run ATLAS open data using Docker:**
+
+1. **Install Docker**: Download and install Docker from the [official website](https://docs.docker.com/get-docker/). 
+2. **Open Docker**
+3.  **Run the Docker Image**: Open your terminal and run the Docker image, available on our [GitHub registry](https://github.com/atlas-outreach-data-tools/notebooks-collection-opendata/pkgs/container/notebooks-collection-opendata).
+```
+docker run -it -p 8888:8888 -v my_volume:/home/jovyan/work ghcr.io/atlas-outreach-data-tools/notebooks-collection-opendata:latest
+```
+4. **Launch the Notebook**: After running the Docker image, use the link provided in the terminal to access the Jupyter interface. The terminal should look like this:
+```
+To access the notebook interface, open this file in a browser:
+        file:///home/jovyan/.local/share/jupyter/runtime/nbserver-15-open.html
+    Or copy and paste one of these URLs:
+        http://4c61742ed77c:8888/?token=34b7f124f6783e047e796fea8061c3fca708a062a902c2f9
+     or http://127.0.0.1:8888/?token=34b7f124f6783e047e796fea8061c3fca708a062a902c2f9
+```
 
-@2021
+For more, please go to: [opendata.atlas.cern/docs/category/choose-your-enviroment](https://opendata.atlas.cern/docs/category/choose-your-enviroment)
 
----
+@2024

binder/environment.yml

@@ -11,6 +11,7 @@ dependencies:
   - hist==2.8.0
   - ipykernel==6.29.5
   - jupyter==1.0.0
+  - libmamba==2.0.4
   - lmfit==1.3.2
   - matplotlib==3.9.1
   - metakernel==0.30.2