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Assorted bioinformatics scripts implemented in python and matlab

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Bioinformatics : Assorted bioinformatics scripts implemented in python and matlab

Written for a bioinformatics course

Includes

  • Protein translation
  • Markov Chain Model for nucleotide sequences
  • Jukes-Cantor model and Genetic Drift
  • Dynamic Programming for Pairwise Alignment
  • Random forests (OU Supercomputer)
  • Protein Structure, Palindromes, and Biopython
  • HMM and splice site recognition
  • GEO and gene expression analysis
  • GO, Clustering and Principal Componenets
  • SNP analysis with python and plink

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