Using Existing PC Values with dcHiC

Using getcHiCinputfromExistingPCs.r, anyone can reformat their existing pc values such that they can use dcHiC. The input must be a five column text file with the following fields:

<pc bedGraph path>	<pc type>	<replicate name>	<sample name>

The first column is the path to the bedGraph file with PC information (4th column of the bedGraph file), the second column can have either 'intra' or 'inter' (whether component calculations were done with intra-chromosomal or inter-chromosomal data). The third column is the replicate name, and the fourth column is the sample name. Replicate names and sample names should be different.