update

src/pspm_cfg/pspm_cfg_run_artefact_rm.m

@@ -1,41 +1,47 @@
 function out = pspm_cfg_run_artefact_rm(job)
 % Executes pspm_pp
-
-% $Id$
-% $Rev$
-
+% Reviewed and updated on 18-Dec-2023 by Teddy
 options = struct;
 options.overwrite = job.overwrite;
-
 filtertype = fieldnames(job.filtertype);
 filtertype = filtertype{1};
 datafile = job.datafile;
 datafile = datafile{1};
 channelnumber = job.chan_nr;
-
 switch filtertype
-    case 'median'
-        n = job.filtertype.(filtertype).nr_time_pt;
-        out = pspm_pp(filtertype, datafile, n, channelnumber, options);
-    case 'butter'
-        freq = job.filtertype.(filtertype).freq;
-        out = pspm_pp(filtertype, datafile, freq, channelnumber, options);
-    case 'scr_pp'
-        scr_job = job.filtertype.(filtertype);
-        % Option structure sent to pspm_simple_qa
-        scr = struct();
-        if isfield(scr_job, 'min'), scr.min = scr_job.min; end % Check if min is defined
-        if isfield(scr_job, 'max'), scr.max = scr_job.max; end % Check if max is defined
-        if isfield(scr_job, 'slope'), scr.slope = scr_job.slope; end % Check if slope is defined
-        if isfield(scr_job.missing_epochs, 'write_to_file') % Check if missing_epochs is defined
-            if isfield(scr_job.missing_epochs.write_to_file,'filename') && isfield(scr_job.missing_epochs.write_to_file,'outdir')
-                scr.missing_epochs_filename = fullfile(scr_job.missing_epochs.write_to_file.outdir{1}, scr_job.missing_epochs.write_to_file.filename);
-            end
-        end
-        if isfield(scr_job, 'deflection_threshold'), scr.deflection_threshold = scr_job.deflection_threshold; end % Check if deflection_threshold is defined
-        if isfield(scr_job, 'data_island_threshold'), scr.data_island_threshold = scr_job.data_island_threshold; end % Check if data_island_threshold is defined
-        if isfield(scr_job, 'expand_epochs'), scr.expand_epochs = scr_job.expand_epochs; end % Check if expand_epochs is defined
-        if isfield(scr_job, 'change_data'), scr_job.change_data = scr_job.change_data; else, scr_job.change_data = "replace"; end % Check if data will be changed
-
-        [~, out] = pspm_scr_pp(datafile, scr);
-end
+  case 'median'
+    n = job.filtertype.(filtertype).nr_time_pt;
+    out = pspm_pp(filtertype, datafile, n, channelnumber, options);
+  case 'butter'
+    freq = job.filtertype.(filtertype).freq;
+    out = pspm_pp(filtertype, datafile, freq, channelnumber, options);
+  case 'scr_pp'
+    scr_job = job.filtertype.(filtertype);
+    % Option structure sent to pspm_simple_qa
+    if isfield(scr_job, 'min'), options.min = scr_job.min; end
+    if isfield(scr_job, 'max'), options.max = scr_job.max; end
+    if isfield(scr_job, 'slope'), options.slope = scr_job.slope; end
+    if isfield(scr_job.missing_epochs, 'write_to_file')
+      if isfield(scr_job.missing_epochs.write_to_file,'filename') && ...
+          isfield(scr_job.missing_epochs.write_to_file,'outdir')
+        options.missing_epochs_filename = fullfile(...
+          scr_job.missing_epochs.write_to_file.outdir{1}, ...
+          scr_job.missing_epochs.write_to_file.filename);
+      end
+    end
+    if isfield(scr_job, 'deflection_threshold')
+      options.deflection_threshold = scr_job.deflection_threshold; 
+    end
+    if isfield(scr_job, 'data_island_threshold')
+      options.data_island_threshold = scr_job.data_island_threshold; 
+    end
+    if isfield(scr_job, 'expand_epochs')
+      options.expand_epochs = scr_job.expand_epochs;
+    end
+    if isfield(scr_job, 'change_data')
+      options.channel_action = 'add'; 
+    else
+      options.channel_action = 'replace'; 
+    end
+    [~, out] = pspm_scr_pp(datafile, options);
+end

src/pspm_cfg/pspm_cfg_run_interpolate.m

@@ -1,26 +1,19 @@
 function out = pspm_cfg_run_interpolate(job)
-
 % Updated 18-12-2023 by Teddy
-
 options = struct();
 fn = job.datafiles;
-
 if isfield(job.mode, 'file')
     options.overwrite = job.mode.file.overwrite;
     options.newfile = true;
 elseif isfield(job.mode, 'channel')
     options.channels = cell(size(job.datafiles));
     options.channels{:} = job.mode.channel.source_chan;
     options.newfile = false;
-
     if isfield(job.mode.channel.mode, 'new_chan')
         options.channel_action = 'add';
     elseif isfield(job.mode.channel.mode, 'replace_chan')
         options.channel_action = 'replace';
-    end;
-
-end;
-
+    end
+end
 options.extrapolate = job.extrapolate;
-
 [~, out] = pspm_interpolate(fn, options);